Evidence map›Paper›PMID 38030610›Full record

ArticleNature communications2023

Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility.

Chow-Lih Yew, Takashi Tsuchimatsu, Rie Shimizu-Inatsugi, Shinsuke Yasuda, Masaomi Hatakeyama, Hiroyuki Kakui, Takuma Ohta, Keita Suwabe, Masao Watanabe, Seiji Takayama and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chow-Lih YewDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, 8057, Zurich, Switzerland.
Takashi TsuchimatsuDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, 8057, Zurich, Switzerland.ORCID 0000-0003-1241-9338
Rie Shimizu-InatsugiDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, 8057, Zurich, Switzerland.ORCID 0000-0002-9899-591X
Shinsuke YasudaGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Masaomi HatakeyamaDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, 8057, Zurich, Switzerland.
Hiroyuki KakuiDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, 8057, Zurich, Switzerland.
Takuma OhtaGraduate School of Bioresources, Mie University, Tsu, 514-0102, Japan.
Keita SuwabeGraduate School of Bioresources, Mie University, Tsu, 514-0102, Japan.
Masao WatanabeGraduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan.ORCID 0000-0002-9419-5149
Seiji TakayamaGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, 630-0192, Japan.ORCID 0000-0002-1432-487X
Kentaro K ShimizuDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, 8057, Zurich, Switzerland. kentaro.shimizu@uzh.ch.ORCID 0000-0002-6483-1781

Funding

European Molecular Biology Organization (EMBO) fellowshipMEXT | Japan Society for the Promotion of Science (JSPS) 21H02162, 22H05172 and 22H05179MEXT | Japan Society for the Promotion of Science (JSPS) 21H04711 and 21H05030MEXT | Japan Society for the Promotion of Science (JSPS) grant numbers 16H06469, 16K21727, 22H02316, 22K21352, 22H05172 and 22H05179MEXT | Japan Society for the Promotion of Science (JSPS) Postdoctoral fellowship, 22K21352, 16H06467 and 17H05833MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR16O3Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 310030_212551, 31003A_182318, 31003A_159767, 31003A_140917, 310030_212674Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 310030_212674Universität Zürich (University of Zurich) URPP Evolutoini in ActionUniversität Zürich (University of Zurich) URPP Evolutoin in Action, Global Strategy and Partnerships Funding Scheme
6 · The paper itself

Abstract

The evolutionary transition to self-compatibility facilitates polyploid speciation. In Arabidopsis relatives, the self-incompatibility system is characterized by epigenetic dominance modifiers, among which small RNAs suppress the expression of a recessive SCR/SP11 haplogroup. Although the contribution of dominance to polyploid self-compatibility is speculated, little functional evidence has been reported. Here we employ transgenic techniques to the allotetraploid plant A. kamchatica. We find that when the dominant SCR-B is repaired by removing a transposable element insertion, self-incompatibility is restored. This suggests that SCR was responsible for the evolution of self-compatibility. By contrast, the reconstruction of recessive SCR-D cannot restore self-incompatibility. These data indicate that the insertion in SCR-B conferred dominant self-compatibility to A. kamchatica. Dominant self-compatibility supports the prediction that dominant mutations increasing selfing rate can pass through Haldane's sieve against recessive mutations. The dominance regulation between subgenomes inherited from progenitors contrasts with previous studies on novel epigenetic mutations at polyploidization termed genome shock.

Indexed as

ArabidopsisSelf-Incompatibility in Flowering PlantsPlantsPolyploidy

Identifiers

PMID38030610
PMCPMC10687001

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.