Evidence map›Paper›PMID 38029747›Full record

ArticleCell2023

Early cellular mechanisms of type I interferon-driven susceptibility to tuberculosis.

Dmitri I Kotov, Ophelia V Lee, Stefan A Fattinger, Charlotte A Langner, Jaresley V Guillen, Joshua M Peters, Andres Moon, Eileen M Burd, Kristen C Witt, Daniel B Stetson and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
20.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Therapeutic remodeling of the tuberculosis granuloma with 1-methyl-D-tryptophan enhances CD8Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Restricted MHC-II trafficking inbioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. The lung tissue environment inbioRxiv : the preprint server for biology · 2026
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Diverse infection models demonstrate robust resistance ofbioRxiv : the preprint server for biology · 2026
    Article
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Dmitri I KotovDivision of Immunology and Molecular Medicine, University of California, Berkeley, Berkeley, CA 94720, USA; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, CA 94720, USA. Electronic address: dkotov@berkeley.edu.
Ophelia V LeeDivision of Immunology and Molecular Medicine, University of California, Berkeley, Berkeley, CA 94720, USA.
Stefan A FattingerDivision of Immunology and Molecular Medicine, University of California, Berkeley, Berkeley, CA 94720, USA.
Charlotte A LangnerDivision of Immunology and Molecular Medicine, University of California, Berkeley, Berkeley, CA 94720, USA.
Jaresley V GuillenDivision of Immunology and Molecular Medicine, University of California, Berkeley, Berkeley, CA 94720, USA.
Joshua M PetersDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Ragon Institute of Mass General, MIT, and Harvard, Cambridge, MA 02139, USA.
Andres MoonDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA 30322, USA.
Eileen M BurdDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA 30322, USA.
Kristen C WittDivision of Immunology and Molecular Medicine, University of California, Berkeley, Berkeley, CA 94720, USA.
Daniel B StetsonDepartment of Immunology, University of Washington, Seattle, WA 98195, USA.
David L JayeDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA 30322, USA.
Bryan D BrysonDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Ragon Institute of Mass General, MIT, and Harvard, Cambridge, MA 02139, USA.
Russell E VanceDivision of Immunology and Molecular Medicine, University of California, Berkeley, Berkeley, CA 94720, USA; Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, CA 94720, USA. Electronic address: rvance@berkeley.edu.
University of California, Berkeley · USEmory University · USHoward Hughes Medical Institute · USMassachusetts General Hospital · USMassachusetts Institute of Technology · USUniversity of Washington · US

Funding

The role of Listeria cyclic-di-AMP during infection and immunityP01AI063302 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI PORTNOY, DANIEL A · 2004 to 2025
$45.5M
Molecular Analysis of the Host Immune Response in LeprosyR01AI022553 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ROBERT L MODLIN · 1989 to 2026
$15.7M
Emory/Georgia TB Research Advancement Center (TRAC)P30AI168386 · NIAID · EMORY UNIVERSITY · PI Jeffrey M Collins · 2022 to 2026
$5.8M
Functional and Structural Dissection of Inflammasome ActivationR37AI075039 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI RUSSELL E VANCE · 2018 to 2026
$3.8M
Specificity and in vivo function of the Naip/Nlrc4 inflammasomesR01AI075039 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI VANCE, RUSSELL E · 2008 to 2017
$3.6M
Dissection of Shigella pathogenesis in vivo using a new oral infection mouse modelR01AI155634 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI VANCE, RUSSELL E · 2020 to 2024
$2.2M
In vivo mechanisms of Mycobacterium tuberculosis control and susceptibilityF32HL158250 · NHLBI · UNIVERSITY OF CALIFORNIA BERKELEY · PI KOTOV, DMITRI I · 2022 to 2024
$210k
Howard Hughes Medical InstituteNHLBI NIH HHS F32 HL158250NIAID NIH HHS P01 AI063302NIAID NIH HHS P30 AI168386NIAID NIH HHS R01 AI022553NIAID NIH HHS R01 AI075039NIAID NIH HHS R01 AI155634NIAID NIH HHS R37 AI075039
6 · The paper itself

Abstract

Mycobacterium tuberculosis (Mtb) causes 1.6 million deaths annually. Active tuberculosis correlates with a neutrophil-driven type I interferon (IFN) signature, but the cellular mechanisms underlying tuberculosis pathogenesis remain poorly understood. We found that interstitial macrophages (IMs) and plasmacytoid dendritic cells (pDCs) are dominant producers of type I IFN during Mtb infection in mice and non-human primates, and pDCs localize near human Mtb granulomas. Depletion of pDCs reduces Mtb burdens, implicating pDCs in tuberculosis pathogenesis. During IFN-driven disease, we observe abundant DNA-containing neutrophil extracellular traps (NETs) described to activate pDCs. Cell-type-specific disruption of the type I IFN receptor suggests that IFNs act on IMs to inhibit Mtb control. Single-cell RNA sequencing (scRNA-seq) indicates that type I IFN-responsive cells are defective in their response to IFNγ, a cytokine critical for Mtb control. We propose that pDC-derived type I IFNs act on IMs to permit bacterial replication, driving further neutrophil recruitment and active tuberculosis disease.

Indexed as

Interferon Type ITuberculosisAnimalsCytokinesDendritic CellsHumansMacrophagesMiceNeutrophilsCytokinesInterferon Type Iinnate immunologyinterstitial macrophageslungmiceMycobacterium tuberculosisneutrophil extracellular trapsneutrophilsplasmacytoid dendritic cellstype I interferons

Identifiers

PMID38029747
PMCPMC10757650
OpenAlexW4389101109

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.