Evidence map›Paper›PMID 38029235›Full record

ArticleFrontiers in cellular and infection microbiology2023

Analysis of spike protein variants evolved in a novel

Dongbum Kim, Jinsoo Kim, Minyoung Kim, Heedo Park, Sangkyu Park, Sony Maharjan, Kyeongbin Baek, Bo Min Kang, Suyeon Kim, Man-Seong Park and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Dongbum Kim *Institute of Medical Science, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Jinsoo Kim *Institute of Medical Science, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Minyoung Kim *Department of Microbiology, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Heedo Park *Department of Microbiology, Institute for Viral Diseases, Vaccine Innovation Center, College of Medicine, Korea University, Seoul, Republic of Korea.
Sangkyu Park *Department of Biochemistry, College of Natural Sciences, Chungbuk National University, Cheongju, Republic of Korea.
Sony MaharjanInstitute of Medical Science, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Kyeongbin BaekDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Bo Min KangDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Suyeon KimDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Man-Seong ParkDepartment of Microbiology, Institute for Viral Diseases, Vaccine Innovation Center, College of Medicine, Korea University, Seoul, Republic of Korea.
Younghee LeeDepartment of Biochemistry, College of Natural Sciences, Chungbuk National University, Cheongju, Republic of Korea.
Hyung-Joo KwonInstitute of Medical Science, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Hallym University · KRChungbuk National University · KRKorea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: The spectrum of SARS-CoV-2 mutations have increased over time, resulting in the emergence of several variants of concern. Persistent infection is assumed to be involved in the evolution of the variants. Calu-3 human lung cancer cells persistently grow without apoptosis and release low virus titers after infection. Methods: We established a novel Results: After infection with parental SARS-CoV-2, viruses were found in the tumor tissues for up to 30 days and acquired various mutations, predominantly in the spike (S) protein, some of which increased while others fluctuated for 30 days. Three viral isolates with different combination of mutations produced higher virus titers than the parental virus in Calu-3 cells without cytopathic effects. In K18-hACE2 mice, the variants were less lethal than the parental virus. Infection with each variant induced production of cross-reactive antibodies to the receptor binding domain of parental SARS-CoV-2 S protein and provided protective immunity against subsequent challenge with parental virus. Discussion: These results suggest that most of the SARS-CoV-2 variants acquired mutations promoting host adaptation in the Calu-3 xenograft mice. This model can be used in the future to further study SARS-CoV-2 variants upon long-term replication

Indexed as

SARS-CoV-2Spike Glycoprotein, CoronavirusAnimalsCell Line, TumorCOVID-19HumansLung NeoplasmsMiceSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2COVID-19K18-hACE2 mouselong-term replication modelSARS-CoV-2variants

Identifiers

PMID38029235
PMCPMC10655031
OpenAlexW4388293960

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.