Evidence map›Paper›PMID 38029202›Full record

ArticleFrontiers in microbiology2023

Dynamic geospatial modeling of mycotoxin contamination of corn in Illinois: unveiling critical factors and predictive insights with machine learning.

Lina Castano-Duque, Edwin Winzeler, Joshua M Blackstock, Cheng Liu, Noemi Vergopolan, Marlous Focker, Kristin Barnett, Phillip Ray Owens, H J van der Fels-Klerx, Martha M Vaughan and 1 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 3 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lina Castano-DuqueFood and Feed Safety Research Unit, Southern Regional Research Center, Agriculture Research Service, United States Department of Agriculture, New Orleans, LA, United States.
Edwin WinzelerDale Bumpers Small Farms Research Center, Agriculture Research Service, United States Department of Agriculture, Booneville, AR, United States.
Joshua M BlackstockDale Bumpers Small Farms Research Center, Agriculture Research Service, United States Department of Agriculture, Booneville, AR, United States.
Cheng LiuMicrobiology and Agrochains Wageningen Food Safety Research, Wageningen, Netherlands.
Noemi VergopolanAtmospheric and Ocean Science Program, Princeton University, Princeton, NJ, United States.
Marlous FockerMicrobiology and Agrochains Wageningen Food Safety Research, Wageningen, Netherlands.
Kristin BarnettAgricultural Products Inspection, Illinois Department of Agriculture, Springfield, IL, United States.
Phillip Ray OwensDale Bumpers Small Farms Research Center, Agriculture Research Service, United States Department of Agriculture, Booneville, AR, United States.
H J van der Fels-KlerxMicrobiology and Agrochains Wageningen Food Safety Research, Wageningen, Netherlands.
Martha M VaughanMycotoxin Prevention and Applied Microbiology Research Unit, United States Department of Agriculture, Agricultural Research Service, National Center for Agricultural Utilization Research, Peoria, IL, United States.
Kanniah RajasekaranFood and Feed Safety Research Unit, Southern Regional Research Center, Agriculture Research Service, United States Department of Agriculture, New Orleans, LA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycotoxin contamination of corn is a pervasive problem that negatively impacts human and animal health and causes economic losses to the agricultural industry worldwide. Historical aflatoxin (AFL) and fumonisin (FUM) mycotoxin contamination data of corn, daily weather data, satellite data, dynamic geospatial soil properties, and land usage parameters were modeled to identify factors significantly contributing to the outbreaks of mycotoxin contamination of corn grown in Illinois (IL), AFL >20 ppb, and FUM >5 ppm. Two methods were used: a gradient boosting machine (GBM) and a neural network (NN). Both the GBM and NN models were dynamic at a state-county geospatial level because they used GPS coordinates of the counties linked to soil properties. GBM identified temperature and precipitation prior to sowing as significant influential factors contributing to high AFL and FUM contamination. AFL-GBM showed that a higher aflatoxin risk index (ARI) in January, March, July, and November led to higher AFL contamination in the southern regions of IL. Higher values of corn-specific normalized difference vegetation index (NDVI) in July led to lower AFL contamination in Central and Southern IL, while higher wheat-specific NDVI values in February led to higher AFL. FUM-GBM showed that temperature in July and October, precipitation in February, and NDVI values in March are positively correlated with high contamination throughout IL. Furthermore, the dynamic geospatial models showed that soil characteristics were correlated with AFL and FUM contamination. Greater calcium carbonate content in soil was negatively correlated with AFL contamination, which was noticeable in Southern IL. Greater soil moisture and available water-holding capacity throughout Southern IL were positively correlated with high FUM contamination. The higher clay percentage in the northeastern areas of IL negatively correlated with FUM contamination. NN models showed high class-specific performance for 1-year predictive validation for AFL (73%) and FUM (85%), highlighting their accuracy for annual mycotoxin prediction. Our models revealed that soil, NDVI, year-specific weekly average precipitation, and temperature were the most important factors that correlated with mycotoxin contamination. These findings serve as reliable guidelines for future modeling efforts to identify novel data inputs for the prediction of AFL and FUM outbreaks and potential farm-level management practices.

Indexed as

aflatoxinAspergillusfumonisinFusariumgradient boostingmachine learningneural networksoil

Identifiers

PMID38029202
PMCPMC10646420

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.