Evidence map›Paper›PMID 38029191›Full record

ArticleFrontiers in microbiology2023

A novel candidate hepatitis C virus genotype 4 subtype identified by next generation sequencing full-genome characterization in a patient from Saudi Arabia.

Mariantonietta Di Stefano, Mona H Ismail, Thomas Leitner, Giuseppina Faleo, Marwan Jabr Alwazzeh, Jean Lutamyo Mbisa, Josè Ramon Fiore, Teresa Antonia Santantonio

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mariantonietta Di Stefano *Section of Infectious Diseases, Department of Clinical and Surgical Sciences, University of Foggia, Foggia, Italy.
Mona H Ismail *Division of Gastroenterology, King Fahd Hospital of the University, Al-Khobar, Saudi Arabia.
Thomas LeitnerTheoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, United States.
Giuseppina FaleoSection of Infectious Diseases, Department of Clinical and Surgical Sciences, University of Foggia, Foggia, Italy.
Marwan Jabr AlwazzehCollege of Medicine, Imam Abdulrahman Bin Faisal University, Dammam, Saudi Arabia.
Jean Lutamyo MbisaAntiviral Unit, Blood Safety, Hepatitis, Sexually Transmitted Infections, and HIV (BSHSH) Service, UK Health Security Agency, London, United Kingdom.
Josè Ramon Fiore *Section of Infectious Diseases, Department of Clinical and Surgical Sciences, University of Foggia, Foggia, Italy.
Teresa Antonia Santantonio *Section of Infectious Diseases, Department of Clinical and Surgical Sciences, University of Foggia, Foggia, Italy.

Funding

Reconstructing HIV Epidemics from HIV PhylogeneticsR01AI087520 · NIAID · TRIAD NATIONAL SECURITY, LLC · PI Thomas K. Leitner · 2010 to 2026
$11.2M
NIAID NIH HHS R01 AI087520
6 · The paper itself

Abstract

Background and aim: Hepatitis C virus (HCV) infection is a major global public health concern, being a leading cause of chronic liver diseases such as chronic hepatitis, cirrhosis, and hepatocellular carcinoma. The virus is classified into 8 genotypes and 93 subtypes, each displaying distinct geographic distributions. Genotype 4 is the most predominant in the Middle East and Eastern Mediterranean and is associated with high rates of hepatitis C infection worldwide. This study used next-generation sequencing to fully characterize the HCV genome and identify a novel subtype within genotype 4 isolated from a 64-year-old Saudi man diagnosed with hepatitis C. Methods: We analyzed the complete genome of the 141-HCV isolate using whole-genome sequencing. Results: Our phylogenetic reconstructions, based on the entire genome of HCV-4 strains, revealed that the 141-HCV isolate formed a distinct group within the genotype 4 classification, providing valuable new insights into the variability of HCV. Conclusion: This discovery of a previously unclassified HCV subtype within genotype 4 sheds light on the ongoing evolution and diversity of the virus. Such knowledge has significant implications for diagnostic and therapeutic approaches, as different subtypes may exhibit varying drug sensitivities and resistance profiles.

Indexed as

genotypesHepatitis C virus (HCV)next generation sequenceSaudi Arabiasubtypes

Identifiers

PMID38029191
PMCPMC10653324

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.