Evidence map›Paper›PMID 38029079›Full record

ArticleFrontiers in microbiology2023

Long-read sequencing reveals the shell microbiome of apparently healthy American lobsters

Svenja Koepper, K Fraser Clark, J Trenton McClure, Crawford W Revie, Henrik Stryhn, Krishna K Thakur

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Svenja KoepperDepartment of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada.
K Fraser ClarkDepartment of Animal Sciences and Aquaculture, Faculty of Agriculture, Dalhousie University, Bible Hill, NS, Canada.
J Trenton McClureDepartment of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada.
Crawford W RevieDepartment of Computer and Information Sciences, University of Strathclyde, Glasgow, United Kingdom.
Henrik StryhnDepartment of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada.
Krishna K ThakurDepartment of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The shell microbial community of lobsters-a key factor in the development of epizootic shell disease (ESD)-is still insufficiently researched in Atlantic Canada and many knowledge gaps remain. This study aimed to establish a baseline description and analysis of the shell microbiome of apparently healthy lobsters from four locations in the region. More than 180 lobster shell swab samples were collected from New Brunswick, Nova Scotia and Prince Edward Island (PEI). PacBio long-read 16S rDNA sequencing and bioinformatic analyses in QIIME2 identified the shell-associated bacteria. The shell microbiome of healthy lobsters consisted mainly of the bacterial classes

Indexed as

16S rRNA geneAquimarinacore microbiomeepizootic shell diseasemicrobial ecologyPacBio

Identifiers

PMID38029079
PMCPMC10658194

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.