Evidence map›Paper›PMID 38025707›Full record

ArticlePeerJ2023

Integrated single-dose kinome profiling data is predictive of cancer cell line sensitivity to kinase inhibitors.

Chinmaya U Joisa, Kevin A Chen, Matthew E Berginski, Brian T Golitz, Madison R Jenner, Gabriela Herrera Loeza, Jen Jen Yeh, Shawn M Gomez

Abstract read
In one paragraph

Article in PeerJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Chinmaya U JoisaJoint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University, Chapel Hill, NC, United States of America.
Kevin A ChenDepartment of Surgery, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America.
Matthew E BerginskiDepartment of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America.
Brian T GolitzEshelman Institute for Innovation, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America.
Madison R JennerDepartment of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America.
Gabriela Herrera LoezaLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America.
Jen Jen YehDepartment of Surgery, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America.
Shawn M GomezJoint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University, Chapel Hill, NC, United States of America.

Funding

Illuminating Function of the Understudied Druggable KinomeU24DK116204 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JOHNSON, GARY L. · 2017 to 2022
$13.6M
Integrating tumor and stroma to understand and predict treatment responseU01CA274298 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Naim Ur Rashid, Susan Tsai · 2022 to 2026
$4.7M
MICROFABRICATED INSTRUMENTATION TO MEASURE SPHINGOLIPID SIGNALING IN HUMAN ACUTE MYELOID LEUKEMIAR01CA233811 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ALLBRITTON, NANCY L., ARMISTEAD, PAUL MICHAEL · 2019 to 2023
$3.1M
Predictive Modeling of the EGFR-MAPK pathway for Triple Negative Breast Cancer PatientsU01CA238475 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C, PEROU, CHARLES M · 2019 to 2023
$3.0M
NCI NIH HHS R01 CA233811NCI NIH HHS U01 CA238475NCI NIH HHS U01 CA274298NIDDK NIH HHS U24 DK116204
6 · The paper itself

Abstract

Protein kinase activity forms the backbone of cellular information transfer, acting both individually and as part of a broader network, the kinome. Their central role in signaling leads to kinome dysfunction being a common driver of disease, and in particular cancer, where numerous kinases have been identified as having a causal or modulating role in tumor development and progression. As a result, the development of therapies targeting kinases has rapidly grown, with over 70 kinase inhibitors approved for use in the clinic and over double this number currently in clinical trials. Understanding the relationship between kinase inhibitor treatment and their effects on downstream cellular phenotype is thus of clear importance for understanding treatment mechanisms and streamlining compound screening in therapy development. In this work, we combine two large-scale kinome profiling data sets and use them to link inhibitor-kinome interactions with cell line treatment responses (AUC/IC

Indexed as

NeoplasmsPhosphotransferasesCell LineHumansProtein Kinase InhibitorsSignal TransductionPhosphotransferasesProtein Kinase InhibitorsCancerCell phenotypesCell signalingData integrationDrug responseDrug sensitivityKinase inhibitor treatmentMachine learningPredictive modeling

Identifiers

PMID38025707
PMCPMC10657565

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.