Evidence map›Paper›PMID 38024240›Full record

ArticleNeuro-oncology advances

Radiomic features define risk and are linked to DNA methylation attributes in primary CNS lymphoma.

Karl-Heinz Nenning, Johanna Gesperger, Julia Furtner, Amelie Nemc, Thomas Roetzer-Pejrimovsky, Seung-Won Choi, Christian Mitter, Stefan L Leber, Johannes Hofmanninger, Johanna Klughammer and 35 more

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Article in Neuro-oncology advances. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

45 authors.

Karl-Heinz NenningDepartment of Biomedical Imaging and Image-guided Therapy, Computational Imaging Research Laboratory, Medical University of Vienna, Vienna, Austria.
Johanna GespergerComprehensive Center for Clinical Neurosciences and Mental Health, Medical University of Vienna, Vienna, Austria.
Julia FurtnerDivision of Neuroradiology, Department of Biomedical Imaging and Image-guided Therapy, Medical University of Vienna, Vienna, Austria.
Amelie NemcCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.
Thomas Roetzer-PejrimovskyDivision of Neuropathology and Neurochemistry, Department of Neurology, Medical University of Vienna, Vienna, Austria.
Seung-Won ChoiDepartment of Neurosurgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Christian MitterDivision of Neuroradiology, Department of Biomedical Imaging and Image-guided Therapy, Medical University of Vienna, Vienna, Austria.
Stefan L LeberDivision of Neuroradiology, Vascular, and Interventional Radiology, Department of Radiology, Medical University of Graz, Graz, Austria.
Johannes HofmanningerDepartment of Biomedical Imaging and Image-guided Therapy, Computational Imaging Research Laboratory, Medical University of Vienna, Vienna, Austria.
Johanna KlughammerCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.
Bekir ErgünerCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.
Marlies BauerDepartment of Neurosurgery, Medical University of Innsbruck, Innsbruck, Austria.
Martina BradaDepartment of Pathology, Klinik Landstraße, Vienna, Austria.
Kyuha ChongDepartment of Neurosurgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Tanisa Brandner-KokaljInstitute of Pathology, State Hospital Klagenfurt, Klagenfurt, Austria.
Christian F FreyschlagDepartment of Neurosurgery, Medical University of Innsbruck, Innsbruck, Austria.
Astrid GramsDepartment of Neuroradiology, Medical University of Innsbruck, Innsbruck, Austria.
Johannes HaybaeckInstitute of Pathology, Neuropathology and Molecular Pathology, Medical University of Innsbruck, Innsbruck, Austria.
Selma HoenigschnablDepartment of Pathology, Donauspital Vienna, Vienna, Austria.
Markus HoffermannDepartment of Neurosurgery, State Hospital Feldkirch, Feldkirch, Austria.
Sarah IglsederDepartment of Neurology, Medical University of Innsbruck, Innsbruck, Austria.
Barbara KieselDepartment of Neurosurgery, Medical University of Vienna, Vienna, Austria.
Melitta KitzwoegererDepartment of Pathology, University Hospital St. Poelten, Karl Landsteiner University of Health Sciences, St. Poelten, Austria.
Waltraud KleindienstDepartment of Neurology, Paracelsus Medical University Salzburg, Salzburg, Austria.
Franz MarholdDepartment of Neurosurgery, University Hospital St. Poelten, Karl Landsteiner University of Health Sciences, St. Poelten, Austria.
Patrizia MoserDepartment of Neurosurgery, Medical University of Innsbruck, Innsbruck, Austria.
Stefan OberndorferDepartment of Neurology, University Hospital St. Poelten, Karl Landsteiner University of Health Sciences, St. Poelten, Austria.
Daniel PinggeraDepartment of Neurosurgery, Medical University of Innsbruck, Innsbruck, Austria.
Florian ScheichelDepartment of Neurosurgery, University Hospital St. Poelten, Karl Landsteiner University of Health Sciences, St. Poelten, Austria.
Camillo SherifDepartment of Neurosurgery, University Hospital St. Poelten, Karl Landsteiner University of Health Sciences, St. Poelten, Austria.
Guenther StockhammerDepartment of Neurology, Medical University of Innsbruck, Innsbruck, Austria.
Martin StultschnigDepartment of Neurology, State Hospital Klagenfurt, Klagenfurt, Austria.
Claudius ThoméDepartment of Neurosurgery, Medical University of Innsbruck, Innsbruck, Austria.
Johannes TrenklerInstitute of Neuroradiology, Kepler University Hospital, NeuromedCampus, Johannes Kepler University of Linz, Linz, Austria.
Tadeja Urbanic-PurkartDepartment of Neurology, Medical University of Graz, Graz, Austria.
Serge WeisDivision of Neuropathology, Kepler University Hospital, NeuromedCampus, Johannes Kepler University, Linz, Austria.
Georg WidhalmDepartment of Neurosurgery, Medical University of Vienna, Vienna, Austria.
Franz WuertzInstitute of Pathology, State Hospital Klagenfurt, Klagenfurt, Austria.
Matthias PreusserDivision of Oncology, Department of Internal Medicine 1, Medical University of Vienna, Vienna, Austria.ORCID https://orcid.org/0000-0003-3541-2315
Bernhard BaumannCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.
Ingrid Simonitsch-KluppDepartment of Pathology, Medical University of Vienna, Vienna, Austria.
Do-Hyun NamDepartment of Neurosurgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Christoph BockCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.ORCID https://orcid.org/0000-0001-6091-3088
Georg LangsDepartment of Biomedical Imaging and Image-guided Therapy, Computational Imaging Research Laboratory, Medical University of Vienna, Vienna, Austria.
Adelheid WoehrerDivision of Neuropathology and Neurochemistry, Department of Neurology, Medical University of Vienna, Vienna, Austria.

Funding

Austrian Science Fund FWF TAI 98
6 · The paper itself

Abstract

Background: The prognostic roles of clinical and laboratory markers have been exploited to model risk in patients with primary CNS lymphoma, but these approaches do not fully explain the observed variation in outcome. To date, neuroimaging or molecular information is not used. The aim of this study was to determine the utility of radiomic features to capture clinically relevant phenotypes, and to link those to molecular profiles for enhanced risk stratification. Methods: In this retrospective study, we investigated 133 patients across 9 sites in Austria (2005-2018) and an external validation site in South Korea (44 patients, 2013-2016). We used T1-weighted contrast-enhanced MRI and an L1-norm regularized Cox proportional hazard model to derive a radiomic risk score. We integrated radiomic features with DNA methylation profiles using machine learning-based prediction, and validated the most relevant biological associations in tissues and cell lines. Results: The radiomic risk score, consisting of 20 mostly textural features, was a strong and independent predictor of survival (multivariate hazard ratio = 6.56 [3.64-11.81]) that remained valid in the external validation cohort. Radiomic features captured gene regulatory differences such as in BCL6 binding activity, which was put forth as testable treatment target for a subset of patients. Conclusions: The radiomic risk score was a robust and complementary predictor of survival and reflected characteristics in underlying DNA methylation patterns. Leveraging imaging phenotypes to assess risk and inform epigenetic treatment targets provides a concept on which to advance prognostic modeling and precision therapy for this aggressive cancer.

Indexed as

DNA methylationprimary CNS lymphomaradiomicsrisk scoresurvival

Identifiers

PMID38024240
PMCPMC10676053

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