Evidence map›Paper›PMID 38022699›Full record

ArticleComputational and structural biotechnology journal2023

The application of machine learning methods to the prediction of novel ligands for ROR

Rafał A Bachorz, Joanna Pastwińska, Damian Nowak, Kaja Karaś, Iwona Karwaciak, Marcin Ratajewski

Abstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rafał A BachorzInstitute of Medical Biology, Polish Academy of Sciences, Lodowa 106, Łódź, 93-232, Poland.
Joanna PastwińskaInstitute of Medical Biology, Polish Academy of Sciences, Lodowa 106, Łódź, 93-232, Poland.
Damian NowakInstitute of Medical Biology, Polish Academy of Sciences, Lodowa 106, Łódź, 93-232, Poland.
Kaja KaraśInstitute of Medical Biology, Polish Academy of Sciences, Lodowa 106, Łódź, 93-232, Poland.
Iwona KarwaciakInstitute of Medical Biology, Polish Academy of Sciences, Lodowa 106, Łódź, 93-232, Poland.
Marcin RatajewskiInstitute of Medical Biology, Polish Academy of Sciences, Lodowa 106, Łódź, 93-232, Poland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this work, we developed and applied a computational procedure for creating and validating predictive models capable of estimating the biological activity of ligands. The combination of modern machine learning methods, experimental data, and the appropriate setup of molecular descriptors led to a set of well-performing models. We thoroughly inspected both the methodological space and various possibilities for creating a chemical feature space. The resulting models were applied to the virtual screening of the ZINC20 database to identify new, biologically active ligands of ROR

Indexed as

Machine learningNuclear receptorsQSARRORγVirtual screening

Identifiers

PMID38022699
PMCPMC10663739

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.