Evidence map›Paper›PMID 38022684›Full record

ArticleFrontiers in immunology2023

Baseline gene signatures of reactogenicity to Ebola vaccination: a machine learning approach across multiple cohorts.

Patrícia Conceição Gonzalez Dias Carvalho, Thiago Dominguez Crespo Hirata, Leandro Yukio Mano Alves, Isabelle Franco Moscardini, Ana Paula Barbosa do Nascimento, André G Costa-Martins, Sara Sorgi, Ali M Harandi, Daniela M Ferreira, Eleonora Vianello and 8 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 8 countries.

Patrícia Conceição Gonzalez Dias CarvalhoOxford Vaccine Group, University of Oxford, Oxford, United Kingdom.
Thiago Dominguez Crespo HirataDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
Leandro Yukio Mano AlvesDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
Isabelle Franco MoscardiniMicrobiotec Srl, Siena, Italy.
Ana Paula Barbosa do NascimentoDivision of Infectious Diseases, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States.
André G Costa-MartinsDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
Sara SorgiLaboratory of Molecular Microbiology and Biotechnology (LAMMB), Department of Medical Biotechnologies, University of Siena, Siena, Italy.
Ali M HarandiDepartment of Microbiology and Immunology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Daniela M FerreiraOxford Vaccine Group, University of Oxford, Oxford, United Kingdom.
Eleonora VianelloDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, Netherlands.
Mariëlle C HaksDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, Netherlands.
Tom H M OttenhoffDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, Netherlands.
Francesco SantoroLaboratory of Molecular Microbiology and Biotechnology (LAMMB), Department of Medical Biotechnologies, University of Siena, Siena, Italy.
Paola Martinez-MurilloCentre for Vaccinology, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Angela HuttnerCentre for Vaccinology, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Claire-Anne SiegristCentre for Vaccinology, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Donata MedagliniDepartment of Medical Biotechnologies, University of Siena, Siena, Italy.
Helder I NakayaScientific Platform Pasteur-University of São Paulo, São Paulo, Brazil.
Leiden University Medical Center · NLUniversidade de São Paulo · BRUniversity of Siena · ITLiverpool School of Tropical Medicine · GBUniversity of Geneva · CHCincinnati Children's Hospital Medical Center · USInstituto de Pesquisas Tecnológicas · BRUniversity Hospital of Geneva · CHUniversity of Gothenburg · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: The rVSVDG-ZEBOV-GP (Ervebo®) vaccine is both immunogenic and protective against Ebola. However, the vaccine can cause a broad range of transient adverse reactions, from headache to arthritis. Identifying baseline reactogenicity signatures can advance personalized vaccinology and increase our understanding of the molecular factors associated with such adverse events. Methods: In this study, we developed a machine learning approach to integrate prevaccination gene expression data with adverse events that occurred within 14 days post-vaccination. Results and Discussion: We analyzed the expression of 144 genes across 343 blood samples collected from participants of 4 phase I clinical trial cohorts: Switzerland, USA, Gabon, and Kenya. Our machine learning approach revealed 22 key genes associated with adverse events such as local reactions, fatigue, headache, myalgia, fever, chills, arthralgia, nausea, and arthritis, providing insights into potential biological mechanisms linked to vaccine reactogenicity.

Indexed as

ArthritisEbola VaccinesEbolavirusHemorrhagic Fever, EbolaAntibodies, ViralClinical Trials, Phase I as TopicHeadacheHumansVaccinationAntibodies, ViralEbola Vaccinesadverse eventsbaseline gene signaturesdata integrationEbolamachine learningpersonalized vaccinologyrVSVDG-ZEBOV-GP vaccinevaccine safety

Identifiers

PMID38022684
PMCPMC10663260
OpenAlexW4388538575

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.