Evidence map›Paper›PMID 38020977›Full record

ArticleCell genomics2023

Parallel laboratory evolution and rational debugging reveal genomic plasticity to

Thomas C Williams, Heinrich Kroukamp, Xin Xu, Elizabeth L I Wightman, Briardo Llorente, Anthony R Borneman, Alexander C Carpenter, Niel Van Wyk, Felix Meier, Thomas R V Collier and 16 more

Open access · goldAbstract read
In one paragraph

Article in Cell genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
  6. Recent technology advancements in large-scale DNA assembly.Quantitative biology (Beijing, China) · 2025
    Article
  7. Article
  8. Review
  9. Article
  10. Synthetic genomes unveil the effects of synonymous recoding.bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 9 institutions in 4 countries.

Thomas C WilliamsSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Heinrich KroukampSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Xin XuSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Elizabeth L I WightmanSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Briardo LlorenteSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Anthony R BornemanThe Australian Wine Research Institute, Adelaide, SA 5064, Australia.
Alexander C CarpenterSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Niel Van WykSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Felix MeierSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Thomas R V CollierSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Monica I EspinosaSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Elizabeth L DanielSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Roy S K WalkerSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Yizhi CaiSchool of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, UK.
Helena K M NevalainenSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Natalie C CurachSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Ira W DevesonSt Vincent's Clinical School, University of New South Wales, Sydney, NSW 2010, Australia.
Timothy R MercerSt Vincent's Clinical School, University of New South Wales, Sydney, NSW 2010, Australia.
Daniel L JohnsonSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Leslie A MitchellInstitute for Systems Genetics, NYU Langone Health, New York, NY 10016, USA.
Joel S BaderDepartment of Biomedical Engineering, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218, USA.
Giovanni StracquadanioInstitute of Quantitative Biology, Biochemistry, and Biotechnology, SynthSys, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.
Jef D BoekeInstitute for Systems Genetics, NYU Langone Health, New York, NY 10016, USA.
Hugh D GooldSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Isak S PretoriusSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
Ian T PaulsenSchool of Natural Sciences, ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, NSW, Australia.
ARC Centre of Excellence in Synthetic Biology · AUCommonwealth Scientific and Industrial Research Organisation · AUGarvan Institute of Medical Research · AUInstitute for Systems Biology · USJohns Hopkins University · USNew South Wales Department of Primary Industries · AUThe University of Adelaide · AUUniversity of Edinburgh · GBUniversity of Manchester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synthetic chromosome engineering is a complex process due to the need to identify and repair growth defects and deal with combinatorial gene essentiality when rearranging chromosomes. To alleviate these issues, we have demonstrated novel approaches for repairing and rearranging synthetic

Indexed as

adaptive laboratory evolutiondirected evolutionSCRaMbLEsynthetic biologysynthetic genomeTAR1yeast

Identifiers

PMID38020977
PMCPMC10667330
OpenAlexW4388523001

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.