Evidence map›Paper›PMID 38019812›Full record

ArticlePloS one2023

Cas9 is mostly orthogonal to human systems of DNA break sensing and repair.

Ekaterina A Maltseva, Inna A Vasil'eva, Nina A Moor, Daria V Kim, Nadezhda S Dyrkheeva, Mikhail M Kutuzov, Ivan P Vokhtantsev, Lilya M Kulishova, Dmitry O Zharkov, Olga I Lavrik

Abstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Photocleavable Guide crRNAs for a Light-Controllable CRISPR/Cas9 System.International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ekaterina A MaltsevaSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Inna A Vasil'evaSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.ORCID 0000-0002-8613-8144
Nina A MoorSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Daria V KimSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Nadezhda S DyrkheevaSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Mikhail M KutuzovSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Ivan P VokhtantsevSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Lilya M KulishovaSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Dmitry O ZharkovSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Olga I LavrikSB RAS Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.ORCID 0000-0001-5980-8889

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR/Cas9 system is а powerful gene editing tool based on the RNA-guided cleavage of target DNA. The Cas9 activity can be modulated by proteins involved in DNA damage signalling and repair due to their interaction with double- and single-strand breaks (DSB and SSB, respectively) generated by wild-type Cas9 or Cas9 nickases. Here we address the interplay between Streptococcus pyogenes Cas9 and key DNA repair factors, including poly(ADP-ribose) polymerase 1 (SSB/DSB sensor), its closest homolog poly(ADP-ribose) polymerase 2, Ku antigen (DSB sensor), DNA ligase I (SSB sensor), replication protein A (DNA duplex destabilizer), and Y-box binding protein 1 (RNA/DNA binding protein). None of those significantly affected Cas9 activity, while Cas9 efficiently shielded DSBs and SSBs from their sensors. Poly(ADP-ribosyl)ation of Cas9 detected for poly(ADP-ribose) polymerase 2 had no apparent effect on the activity. In cellulo, Cas9-dependent gene editing was independent of poly(ADP-ribose) polymerase 1. Thus, Cas9 can be regarded as an enzyme mostly orthogonal to the natural regulation of human systems of DNA break sensing and repair.

Indexed as

CRISPR-Cas SystemsPoly(ADP-ribose) PolymerasesDNADNA BreaksDNA DamageDNA RepairHumansRNADNAPoly(ADP-ribose) PolymerasesRNA

Identifiers

PMID38019812
PMCPMC10686484

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.