Evidence map›Paper›PMID 38019698›Full record

ArticleInfluenza and other respiratory viruses2023

Monitoring the quality of SARS-CoV-2 virus detection in molecular diagnostic laboratories in the Eastern Mediterranean Region during the COVID-19 pandemic.

Luke W Meredith, Mustafa Aboualy, Rachel Ochola, Mehmet Ozel, Abdinasir Abubakar, Amal Barakat

Open access · goldAbstract read
In one paragraph

Article in Influenza and other respiratory viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Luke W MeredithInfectious Hazard Management, Department of Health Emergency World Health Organization, Eastern Mediterranean Regional Office Cairo Egypt.ORCID 0000-0002-3802-8290
Mustafa AboualyInfectious Hazard Management, Department of Health Emergency World Health Organization, Eastern Mediterranean Regional Office Cairo Egypt.
Rachel OcholaInfectious Hazard Management, Department of Health Emergency World Health Organization, Eastern Mediterranean Regional Office Cairo Egypt.
Mehmet OzelInfectious Hazard Management, Department of Health Emergency World Health Organization, Eastern Mediterranean Regional Office Cairo Egypt.
Abdinasir AbubakarInfectious Hazard Management, Department of Health Emergency World Health Organization, Eastern Mediterranean Regional Office Cairo Egypt.
Amal BarakatInfectious Hazard Management, Department of Health Emergency World Health Organization, Eastern Mediterranean Regional Office Cairo Egypt.
World Health Organization Regional Office for the Eastern Mediterranean · EG

Funding

World Health Organization 001
6 · The paper itself

Abstract

introductionThe COVID-19 pandemic placed unprecedented stress on laboratories in the Eastern Mediterranean Region. Building on existing capacity for influenza diagnostics, countries introduced COVID-19 diagnostic support to ~100% regional coverage. A key challenge during the expansion was maintaining quality testing in laboratories, ensuring that correct results were shared with medical facilities.

methodsWHO organized two rounds of independently monitored severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) external quality assurance programs (EQAP). The Public Health Laboratory (PHL) division of WHO supplied external quality assurance (EQA) panels, from the Royal College of Pathologists of Australasia Quality Assurance Programme (RCPAQAP) Australia to laboratories not enrolled in recurring Global Influenza Surveillance and Response System (GISRS) quality assurance programs, in which national influenza centers routinely participate.

resultsFifteen and 14 countries participated in PHL/EQAP for SARS-CoV-2 between 2020 and 2022. Concordance was consistent between rounds, reaching 96.4% and 89.9%. A separate assessment of GISRS/EQAP to national-level laboratories identified high levels of response and concordance for SARS-CoV-2 (100% response, 93% concordance), which was reduced for influenza (50% response rate, 80% concordance), reflecting the challenge of prioritizing pathogens during outbreaks.

conclusionThe proliferation of laboratories in response to COVID-19 was a success story from the pandemic. However, monitoring the quality of laboratories was challenging via existing EQAP. The addition of PHL/EQAP provided a mechanism to monitor performance of laboratories that were not designated as national influenza centers. While a high proportion of laboratories attained good results, continual emphasis on quality and enrollment in EQAP is key to ensuring sustainability of laboratory testing in future.

Indexed as

COVID-19Influenza, HumanCOVID-19 TestingHumansLaboratoriesMediterranean RegionPandemicsPathology, MolecularSARS-CoV-2COVID-19EMROlaboratoryqualitySARS-CoV-2surveillance

Identifiers

PMID38019698
PMCPMC10654553
OpenAlexW4388768512

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.