Evidence map›Paper›PMID 38017088›Full record

ArticleScientific reports2023

Whole genome sequencing provides evidence for Bacillus velezensis SH-1471 as a beneficial rhizosphere bacterium in plants.

Yunxin Shen, Zhufeng Shi, Jiangyuan Zhao, Minggang Li, Jiacai Tang, Nan Wang, Yanfang Mo, Tongyu Yang, Xudong Zhou, Qibin Chen and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Genomic exploration ofMicrobiology spectrum · 2026
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  5. Foods (Basel, Switzerland) · 2026
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  6. Article
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  8. Genomic characterization ofFrontiers in microbiology · 2026
    Article
  9. Article
  10. Article
  11. Frontiers in microbiology · 2025
    Article
  12. Dual benefits ofFrontiers in plant science · 2025
    Article
  13. Inoculation ofFrontiers in plant science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yunxin Shen *Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650204, China.
Zhufeng Shi *Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650204, China.
Jiangyuan ZhaoYunnan Institute of Microbiology, Yunnan University, Kunming, 650106, China.
Minggang LiYunnan Institute of Microbiology, Yunnan University, Kunming, 650106, China.
Jiacai TangInstitute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650204, China.
Nan WangInstitute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650204, China.
Yanfang MoInstitute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650204, China.
Tongyu YangInstitute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650204, China.
Xudong ZhouInstitute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650204, China.
Qibin ChenCollege of Plant Protection, Yunnan Agricultural University, Kunming, 655508, China. tclass99@163.com.
Peiweng YangInstitute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, 650204, China. pwyang2000@126.com.
Yunnan Academy of Agricultural Sciences · CNYunnan Agricultural University · CNYunnan University · CN

Funding

China 32060624Yunnan Province 202202AE090010
6 · The paper itself

Abstract

Bacillus is widely used in agriculture due to its diverse biological activities. We isolated a Bacillus velezensis SH-1471 from the rhizosphere soil of healthy tobacco, which has broad-spectrum antagonistic activity against a variety of plant pathogenic fungi such as Fusarium oxysporum, and can be colonized in the rhizosphere of a variety of plants. This study will further explore its mechanism by combining biological and molecular biology methods. SH-1471 contains a ring chromosome of 4,181,346 bp with a mean G + C content of 46.18%. We identified 14 homologous genes related to biosynthesis of resistant secondary metabolite, and three clusters encoded potential new antibacterial substances. It also contains a large number of genes from colonizing bacteria and genes related to plant bacterial interactions. It also contains genes related to environmental stress, as well as genes related to drug resistance. We also found that there are many metabolites in the strain that can inhibit the growth of pathogens. In addition, our indoor pot test found that SH-1471 has a good control effect on tomato wilt, and could significantly improve plant height, stem circumference, root length, root weight, and fresh weight and dry weight of the aboveground part of tomato seedlings. Therefore, SH-1471 is a potential biological control strain with important application value. The results of this study will help to further study the mechanism of SH-1471 in biological control of plant diseases and promote its application.

Indexed as

BacillusRhizosphereBacteriaFungiWhole Genome Sequencing

Identifiers

PMID38017088
PMCPMC10684890
OpenAlexW4389098116

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.