Evidence map›Paper›PMID 38014954›Full record

ArticlemSystems2023

Insights into virulence: structure classification of the

Lisa N Kinch, R Dustin Schaeffer, Jing Zhang, Qian Cong, Kim Orth, Nick Grishin

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Refinement and curation of homologous groups facilitated by structure prediction.Protein science : a publication of the Protein Society · 2025
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Lisa N KinchDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.ORCID 0000-0003-3041-2615
R Dustin SchaefferDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Jing ZhangDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Qian CongDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Kim OrthDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.ORCID 0000-0002-0678-7620
Nick GrishinDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Howard Hughes Medical Institute · USSouthwestern Medical Center · USThe University of Texas Southwestern Medical Center · US

Funding

Biochemistry, biology and diversity of Fic domainsR35GM134945 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ORTH, KIM · 2020 to 2024
$1.8M
Computational analysis of proteinsR35GM127390 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GRISHIN, NICK V. · 2018 to 2022
$1.5M
ECOD: Large scale classification of predicted and experimental protein structuresR01GM147367 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Richard Dustin Schaeffer · 2023 to 2026
$1.4M
Proteostasis, AMPylation and the Unfolded Protein repsonse (UPR)R01GM115188 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ORTH, KIM · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM115188NIGMS NIH HHS R01 GM147367NIGMS NIH HHS R35 GM127390NIGMS NIH HHS R35 GM134945
6 · The paper itself

Abstract

importanceThe pandemic

Indexed as

Vibrio parahaemolyticusGenomicsHumansVirulenceVirulence FactorsVirulence Factorscomparative studiesevolutionfood-borne pathogensgenome analysismobile genetic elementspathogenicity islandsprotein structure-functionVibrio parahaemolyticusvirulence

Identifiers

PMID38014954
PMCPMC10734457
OpenAlexW4389085375

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.