Evidence map›Paper›PMID 38014344›Full record

ArticlebioRxiv : the preprint server for biology2023

Engineered odorant receptors illuminate structural principles of odor discrimination.

Claire A de March, Ning Ma, Christian B Billesbølle, Jeevan Tewari, Claudia Llinas Del Torrent, Wijnand J C van der Velden, Ichie Ojiro, Ikumi Takayama, Bryan Faust, Linus Li and 3 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Claire A de MarchDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.ORCID 0000-0001-6461-5547
Ning MaDepartment of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, USA.
Christian B BillesbølleDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA, USA.ORCID 0000-0001-8084-1552
Jeevan TewariDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.ORCID 0000-0001-6786-3917
Claudia Llinas Del TorrentDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA, USA.ORCID 0000-0002-6772-6856
Wijnand J C van der VeldenDepartment of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, USA.
Ichie OjiroDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.
Ikumi TakayamaDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.
Bryan FaustDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA, USA.ORCID 0000-0002-4126-6409
Linus LiDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA, USA.
Nagarajan VaidehiDepartment of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, USA.ORCID 0000-0001-8100-8132
Aashish ManglikDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA, USA.ORCID 0000-0002-7173-3741
Hiroaki MatsunamiDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.ORCID 0000-0002-8850-2608
Duke University · USCity of Hope · USUniversity of California, San Francisco · USUniversitat Autònoma de Barcelona · ESCentre National de la Recherche Scientifique · FR

Funding

The Stanford-SLAC CryoEM Center supplementU24GM129541 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH, HEDMAN, BRITT · 2018 to 2023
$54.8M
Enhancing olfactory receptor expression for biochemical studies of odorant-receptor interactionsR01DC020353 · NIDCD · DUKE UNIVERSITY · PI Aashish Manglik, Hiroaki Matsunami · 2022 to 2026
$3.3M
Acquisition of an electron microscope for high-resolution single particle cryo-EMS10OD021741 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2016 to 2016
$2.0M
Linux cluster for near atomic resolution single particle cryo-EMS10OD020054 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2015 to 2015
$456k
Understanding of G protein-coupled odorant receptors functionK99DC018333 · NIDCD · DUKE UNIVERSITY · PI DE MARCH, CLAIRE A. · 2020 to 2021
$172k
NIDCD NIH HHS K99 DC018333NIDCD NIH HHS R01 DC020353NIGMS NIH HHS U24 GM129541NIH HHS S10 OD020054NIH HHS S10 OD021741
6 · The paper itself

Abstract

A central challenge in olfaction is understanding how the olfactory system detects and distinguishes odorants with diverse physicochemical properties and molecular configurations. Vertebrate animals perceive odors via G protein-coupled odorant receptors (ORs). In humans, ~400 ORs enable the sense of smell. The OR family is composed of two major classes: Class I ORs are tuned to carboxylic acids while Class II ORs, representing the vast majority of the human repertoire, respond to a wide variety of odorants. How ORs recognize chemically diverse odorants remains poorly understood. A fundamental bottleneck is the inability to visualize odorant binding to ORs. Here, we uncover fundamental molecular properties of odorant-OR interactions by employing engineered ORs crafted using a consensus protein design strategy. Because such consensus ORs (consORs) are derived from the 17 major subfamilies of human ORs, they provide a template for modeling individual native ORs with high sequence and structural homology. The biochemical tractability of consORs enabled four cryoEM structures of distinct consORs with unique ligand recognition properties. The structure of a Class I consOR, consOR51, showed high structural similarity to the native human receptor OR51E2 and yielded a homology model of a related member of the human OR51 family with high predictive power. Structures of three Class II consORs revealed distinct modes of odorant-binding and activation mechanisms between Class I and Class II ORs. Thus, the structures of consORs lay the groundwork for understanding molecular recognition of odorants by the OR superfamily.

Identifiers

PMID38014344
PMCPMC10680712
OpenAlexW4388784950

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.