Evidence map›Paper›PMID 38010391›Full record

ArticleJournal of cancer research and clinical oncology2023

SNP array genomic analysis of matched pairs of brain and liver metastases in primary colorectal cancer.

Vivian-Pascal Brandt, Heidrun Holland, Marco Wallenborn, Ronald Koschny, Clara Frydrychowicz, Mandy Richter, Lydia Holland, Ulf Nestler, Caroline Sander

Open access · hybridAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Vivian-Pascal Brandt *Department of Neurosurgery, University Hospital Leipzig, Leipzig, Saxony, Germany. Vivian.Brandt@medizin.uni-leipzig.de.
Heidrun Holland *Saxonian Incubator for Clinical Translation (SIKT), University of Leipzig, Leipzig, Saxony, Germany.
Marco WallenbornDepartment of Neurosurgery, University Hospital Leipzig, Leipzig, Saxony, Germany.
Ronald KoschnyInterdisciplinary Endoscopy Center (IEZ), Department of Gastroenterology and Hepatology, University Hospital Heidelberg, Heidelberg, Baden-Wuerttemberg, Germany.
Clara FrydrychowiczPaul Flechsig Institute of Neuropathology, University Medicine Leipzig, Leipzig, Saxony, Germany.
Mandy RichterSaxonian Incubator for Clinical Translation (SIKT), University of Leipzig, Leipzig, Saxony, Germany.
Lydia HollandSaxonian Incubator for Clinical Translation (SIKT), University of Leipzig, Leipzig, Saxony, Germany.
Ulf NestlerDepartment of Neurosurgery, University Hospital Leipzig, Leipzig, Saxony, Germany.
Caroline SanderDepartment of Neurosurgery, University Hospital Leipzig, Leipzig, Saxony, Germany.
University Hospital Leipzig · DELeipzig University · DEUniversity Hospital Heidelberg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeBrain metastasis formation is a rare and late event in colorectal cancer (CRC) patients and associated with poor survival. In contrast to other metastatic sites, the knowledge on chromosomal aberrations in brain metastases is very limited.

methodsTherefore, we carried out single nucleotide polymorphism (SNP) array analyses on matched primary CRC and brain metastases of four patients as well as on liver metastases of three patients.

resultsBrain metastases showed more chromosomal aberrations than primary tumors or liver metastases. Commonly occurring aberrations were gain of 8q11.1-q24.3 (primary CRC), gain of 13q12.13-q12.3 (liver metastases), and gain of 20q11.1-q13.33 (brain metastases). Furthermore, we found one copy-neutral loss of heterozygosity (cn-LOH) region on chromosome 3 in primary CRC, three cn-LOH regions in liver metastases and 23 cn-LOH regions in brain metastases, comprising 26 previously undescribed sites.

conclusionThe more frequent occurrence of cn-LOHs and subsequently affected genes in brain metastases shed light on the pathophysiology of brain metastasis formation. Further pairwise genetic analyses between primary tumors and their metastases will help to define the role of affected genes in cn-LOH regions.

Indexed as

Brain NeoplasmsColorectal NeoplasmsLiver NeoplasmsBrainChromosome AberrationsGenomicsHumansPolymorphism, Single NucleotideBrain metastasisChromosomal aberrationCn-LOHColorectal cancerLiver metastasisSNP array

Identifiers

PMID38010391
PMCPMC10725338
OpenAlexW4389055997

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.