Evidence map›Paper›PMID 38009921›Full record

ArticleDevelopment (Cambridge, England)2023

Caenorhabditis elegans germ granules are present in distinct configurations and assemble in a hierarchical manner.

Celja J Uebel, Sanjana Rajeev, Carolyn M Phillips

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 21 citations in OpenAlex.

  1. bioRxiv : the preprint server for biology · 2026
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  11. RNA Helicase A promotes small RNA biogenesis and sorting in germ cells.bioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

  • Update of
    2023
5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Celja J UebelDepartment of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0002-0362-1238
Sanjana RajeevDepartment of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0009-0004-5766-2264
Carolyn M PhillipsDepartment of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0002-6228-6468
University of Southern California · US

Funding

Regulation of gene expression and genome organization by small RNAsR35GM119656 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Carolyn Marie Phillips · 2016 to 2026
$5.3M
NIGMS NIH HHS R35 GM119656
6 · The paper itself

Abstract

RNA silencing pathways are complex, highly conserved, and perform crucial regulatory roles. In Caenorhabditis elegans germlines, RNA surveillance occurs through a series of perinuclear germ granule compartments - P granules, Z granules, SIMR foci, and Mutator foci - multiple of which form via phase separation. Although the functions of individual germ granule proteins have been extensively studied, the relationships between germ granule compartments (collectively, 'nuage') are less understood. We find that key germ granule proteins assemble into separate but adjacent condensates, and that boundaries between germ granule compartments re-establish after perturbation. We discover a toroidal P granule morphology, which encircles the other germ granule compartments in a consistent exterior-to-interior spatial organization, providing broad implications for the trajectory of an RNA as it exits the nucleus. Moreover, we quantify the stoichiometric relationships between germ granule compartments and RNA to reveal discrete populations of nuage that assemble in a hierarchical manner and differentially associate with RNAi-targeted transcripts, possibly suggesting functional differences between nuage configurations. Our work creates a more accurate model of C. elegans nuage and informs the conceptualization of RNA silencing through the germ granule compartments.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsCytoplasmic GranulesGerm Cell Ribonucleoprotein GranulesGerm CellsRNACaenorhabditis elegans ProteinsRNACaenorhabditis elegansGene regulationGerm granulesNuageRNAiSmall RNAs

Identifiers

PMID38009921
PMCPMC10753583
OpenAlexW4389036060

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.