Evidence map›Paper›PMID 38005907›Full record

ArticleViruses2023

Characterization of Two Aggressive PepMV Isolates Useful in Breeding Programs.

Cristina Alcaide, Eduardo Méndez-López, Jesús R Úbeda, Pedro Gómez, Miguel A Aranda

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Cristina Alcaide"Del Segura" Centre for Applied Biology (CEBAS), Consejo Superior de Investigaciones Científicas (CSIC), 30100 Murcia, Spain.ORCID 0000-0002-7482-9810
Eduardo Méndez-López"Del Segura" Centre for Applied Biology (CEBAS), Consejo Superior de Investigaciones Científicas (CSIC), 30100 Murcia, Spain.
Jesús R Úbeda"Del Segura" Centre for Applied Biology (CEBAS), Consejo Superior de Investigaciones Científicas (CSIC), 30100 Murcia, Spain.
Pedro Gómez"Del Segura" Centre for Applied Biology (CEBAS), Consejo Superior de Investigaciones Científicas (CSIC), 30100 Murcia, Spain.ORCID 0000-0003-2830-4105
Miguel A Aranda"Del Segura" Centre for Applied Biology (CEBAS), Consejo Superior de Investigaciones Científicas (CSIC), 30100 Murcia, Spain.ORCID 0000-0002-0828-973X
Consejo Superior de Investigaciones Científicas · ES

Funding

Ministerio de Ciencia e Innovación PID2021-125010OB-I00Ministerio de Ciencia e Innovación PLEC2021-007715
6 · The paper itself

Abstract

Pepino mosaic virus (PepMV) causes significant economic losses in tomato crops worldwide. Since its first detection infecting tomato in 1999, aggressive PepMV variants have emerged. This study aimed to characterize two aggressive PepMV isolates, PepMV-H30 and PepMV-KLP2. Both isolates were identified in South-Eastern Spain infecting tomato plants, which showed severe symptoms, including bright yellow mosaics. Full-length infectious clones were generated, and phylogenetic relationships were inferred using their nucleotide sequences and another 35 full-length sequences from isolates representing the five known PepMV strains. Our analysis revealed that PepMV-H30 and PepMV-KLP2 belong to the EU and CH2 strains, respectively. Amino acid sequence comparisons between these and mild isolates identified 8 and 15 amino acid substitutions for PepMV-H30 and PepMV-KLP2, respectively, potentially involved in severe symptom induction. None of the substitutions identified in PepMV-H30 have previously been described as symptom determinants. The E236K substitution, originally present in the PepMV-H30 CP, was introduced into a mild PepMV-EU isolate, resulting in a virus that causes symptoms similar to those induced by the parental PepMV-H30 in

Indexed as

PotexvirusSolanum lycopersicumAmino Acid SequencePhylogenyPlant BreedingPlant Diseasesbright yellow mosaiccoat proteinmutationPepMV strainssymptom inductionvirus evolution

Identifiers

PMID38005907
PMCPMC10674935
OpenAlexW4388534282

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.