Evidence map›Paper›PMID 38004704›Full record

ArticleMicroorganisms2023

Development of a Melting-Curve-Based Multiplex Real-Time PCR Assay for the Simultaneous Detection of Viruses Causing Respiratory Infection.

Eliandro Reis Tavares, Thiago Ferreira de Lima, Guilherme Bartolomeu-Gonçalves, Isabela Madeira de Castro, Daniel Gaiotto de Lima, Paulo Henrique Guilherme Borges, Gerson Nakazato, Renata Katsuko Takayama Kobayashi, Emerson José Venancio, César Ricardo Teixeira Tarley and 15 more

Abstract read
In one paragraph

Article in Microorganisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Design of a 2D Melting Curve-Based Multiplex PCR Assay for Detection of SARS-CoV-2/RSV/Influenza A-B.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2025
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Eliandro Reis TavaresLaboratory of Molecular Biology of Microorganisms, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.
Thiago Ferreira de LimaGraduate Program in Microbiology, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.
Guilherme Bartolomeu-GonçalvesGraduate Program in Clinical and Laboratory Pathophysiology, Department of Pathology, Clinical and Toxicological Analysis, State University of Londrina, Londrina 86038-350, Brazil.
Isabela Madeira de CastroGraduate Program in Microbiology, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.
Daniel Gaiotto de LimaLaboratory of Molecular Biology of Microorganisms, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.ORCID 0000-0003-4100-4238
Paulo Henrique Guilherme BorgesGraduate Program in Microbiology, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.ORCID 0000-0002-5412-053X
Gerson NakazatoGraduate Program in Microbiology, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.
Renata Katsuko Takayama KobayashiGraduate Program in Microbiology, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.ORCID 0000-0001-7170-2155
Emerson José VenancioGraduate Program in Clinical and Laboratory Pathophysiology, Department of Pathology, Clinical and Toxicological Analysis, State University of Londrina, Londrina 86038-350, Brazil.ORCID 0000-0002-3735-9207
César Ricardo Teixeira TarleyGraduate Program in Chemistry, Department of Chemistry, State University of Londrina, Londrina 86057-970, Brazil.
Elaine Regina Delicato de AlmeidaDepartment of Pathology, Clinical and Toxicological Analysis, State University of Londrina, Londrina 86038-350, Brazil.
Marsileni PelissonGraduate Program in Clinical and Laboratory Pathophysiology, Department of Pathology, Clinical and Toxicological Analysis, State University of Londrina, Londrina 86038-350, Brazil.ORCID 0000-0001-7331-6645
Eliana Carolina VesperoGraduate Program in Clinical and Laboratory Pathophysiology, Department of Pathology, Clinical and Toxicological Analysis, State University of Londrina, Londrina 86038-350, Brazil.
Andrea Name Colado SimãoGraduate Program in Clinical and Laboratory Pathophysiology, Department of Pathology, Clinical and Toxicological Analysis, State University of Londrina, Londrina 86038-350, Brazil.
Márcia Regina Eches PeruginiGraduate Program in Clinical and Laboratory Pathophysiology, Department of Pathology, Clinical and Toxicological Analysis, State University of Londrina, Londrina 86038-350, Brazil.
Gilselena KerbauyGraduate Program in Nursing, Department of Nursing, State University of Londrina, Londrina 86038-350, Brazil.
Marco Aurélio FornazieriGraduate Program in Health Sciences, Department of Clinical Surgery, State University of Londrina, Londrina 86038-350, Brazil.
Maria Cristina Bronharo TognimDepartment of Basic Health Sciences, State University of Maringá, Maringá 87020-900, Brazil.
Viviane Monteiro GóesInstitute of Molecular Biology of Paraná, Curitiba 81350-010, Brazil.
Tatiana de Arruda Campos Brasil de SouzaCarlos Chagas Institute, Oswaldo Cruz Foundation (FIOCRUZ-Pr), Curitiba 81350-010, Brazil.
Danielle Bruna Leal OliveiraAlbert Einstein Hospital, São Paulo 05652-900, Brazil.
Edison Luiz DurigonLaboratory of Clinical and Molecular Virology, University of São Paulo, São Paulo 05508-000, Brazil.ORCID 0000-0003-4898-6553
Lígia Carla Faccin-GalhardiGraduate Program in Microbiology, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.
Lucy Megumi YamauchiLaboratory of Molecular Biology of Microorganisms, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.ORCID 0000-0003-2241-8814
Sueli Fumie Yamada-OgattaLaboratory of Molecular Biology of Microorganisms, Department of Microbiology, State University of Londrina, Londrina 86057-970, Brazil.ORCID 0000-0003-1183-146X

Funding

Coordenação de Aperfeicoamento de Pessoal de Nível Superior CAPES, Financial Code 01National Council for Scientific and Technological Development CNPq, Process 402387/2020-1
6 · The paper itself

Abstract

The prompt and accurate identification of the etiological agents of viral respiratory infections is a critical measure in mitigating outbreaks. In this study, we developed and clinically evaluated a novel melting-curve-based multiplex real-time PCR (M-m-qPCR) assay targeting the RNA-dependent RNA polymerase (RdRp) and nucleocapsid phosphoprotein N of SARS-CoV-2, the Matrix protein 2 of the Influenza A virus, the RdRp domain of the L protein from the Human Respiratory Syncytial Virus, and the polyprotein from Rhinovirus B genes. The analytical performance of the M-m-qPCR underwent assessment using in silico analysis and a panel of reference and clinical strains, encompassing viral, bacterial, and fungal pathogens, exhibiting 100% specificity. Moreover, the assay showed a detection limit of 10 copies per reaction for all targeted pathogens using the positive controls. To validate its applicability, the assay was further tested in simulated nasal fluid spiked with the viruses mentioned above, followed by validation on nasopharyngeal swabs collected from 811 individuals. Among them, 13.4% (109/811) tested positive for SARS-CoV-2, and 1.1% (9/811) tested positive for Influenza A. Notably, these results showed 100% concordance with those obtained using a commercial kit. Therefore, the M-m-qPCR exhibits great potential for the routine screening of these respiratory viral pathogens.

Indexed as

COVID-19Human Respiratory Syncytial VirusHuman Rhinovirus BInfluenza A virusnucleic acid amplification testSARS-CoV-2

Identifiers

PMID38004704
PMCPMC10672821

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.