Evidence map›Paper›PMID 38003665›Full record

ArticleInternational journal of molecular sciences2023

Patch Track Software for Measuring Kinematic Phenotypes of Arabidopsis Roots Demonstrated on Auxin Transport Mutants.

Ashley R Henry, Nathan D Miller, Edgar P Spalding

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ashley R HenryDepartment of Botany, University of Wisconsin, Madison, WI 53706, USA.
Nathan D MillerDepartment of Botany, University of Wisconsin, Madison, WI 53706, USA.
Edgar P SpaldingDepartment of Botany, University of Wisconsin, Madison, WI 53706, USA.

Funding

National Science Foundation 1940115
6 · The paper itself

Abstract

Plant roots elongate when cells produced in the apical meristem enter a transient period of rapid expansion. To measure the dynamic process of root cell expansion in the elongation zone, we captured digital images of growing Arabidopsis roots with horizontal microscopes and analyzed them with a custom image analysis program (PatchTrack) designed to track the growth-driven displacement of many closely spaced image patches. Fitting a flexible logistics equation to patch velocities plotted versus position along the root axis produced the length of the elongation zone (mm), peak relative elemental growth rate (% h

Indexed as

ArabidopsisArabidopsis ProteinsBiomechanical PhenomenaGene Expression Regulation, PlantIndoleacetic AcidsMembrane Transport ProteinsPlant RootsSoftwareArabidopsis ProteinsIndoleacetic AcidsMembrane Transport Proteinscell expansioncomputer visionhigh-throughput phenotypingimage analysiskinematicsroot elongation

Identifiers

PMID38003665
PMCPMC10671601

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.