Evidence map›Paper›PMID 38003093›Full record

ArticleAnimals : an open access journal from MDPI2023

Comprehensive Gene Expression Profiling Analysis of Adipose Tissue in Male Individuals from Fat- and Thin-Tailed Sheep Breeds.

Sana Farhadi, Karim Hasanpur, Jalil Shodja Ghias, Valiollah Palangi, Aristide Maggiolino, Vincenzo Landi

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Sana FarhadiDepartment of Animal Science, Faculty of Agriculture, University of Tabriz, Tabriz 51666-16471, Iran.ORCID 0000-0003-2980-8823
Karim HasanpurDepartment of Animal Science, Faculty of Agriculture, University of Tabriz, Tabriz 51666-16471, Iran.
Jalil Shodja GhiasDepartment of Animal Science, Faculty of Agriculture, University of Tabriz, Tabriz 51666-16471, Iran.
Valiollah PalangiDepartment of Animal Science, Faculty of Agriculture, Ege University, 35100 Izmir, Türkiye.ORCID 0000-0001-6470-2608
Aristide MaggiolinoDepartment of Veterinary Medicine, University of Bari Aldo Moro, 70010 Valenzano, Italy.ORCID 0000-0001-7128-8556
Vincenzo LandiDepartment of Veterinary Medicine, University of Bari Aldo Moro, 70010 Valenzano, Italy.ORCID 0000-0003-1385-8439
University of Tabriz · IRUniversity of Bari Aldo Moro · ITEge University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been shown that tail fat content varies significantly among sheep breeds and plays a significant role in meat quality. Recently, significant efforts have been made to understand the physiological, biochemical, and genomic regulation of fat deposition in sheep tails in order to unravel the mechanisms underlying energy storage and adipose tissue lipid metabolism. RNA-seq has enabled us to provide a high-resolution snapshot of differential gene expression between fat- and thin-tailed sheep breeds. Therefore, three RNA-seq datasets were meta-analyzed for the current work to elucidate the transcriptome profile differences between them. Specifically, we identified hub genes, performed gene ontology (GO) analysis, carried out enrichment analyses of the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, and validated hub genes using machine learning algorithms. This approach revealed a total of 136 meta-genes, 39 of which were not significant in any of the individual studies, indicating the higher statistical power of the meta-analysis. Furthermore, the results derived from the use of machine learning revealed

Indexed as

fat depositionfat-tailed sheepmachine learningRNA-seq

Identifiers

PMID38003093
PMCPMC10668686
OpenAlexW4388634854

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.