Evidence map›Paper›PMID 38003033›Full record

ArticleGenes2023

NGS Custom Panel Implementation in Patients with Non-Syndromic Autism Spectrum Disorders in the Clinical Routine of a Tertiary Hospital.

Ana Karen Sandoval-Talamantes, Jair Antonio Tenorio-Castaño, Fernando Santos-Simarro, Carmen Adán, María Fernández-Elvira, Laura García-Fernández, Yolanda Muñoz, Pablo Lapunzina, Julián Nevado

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Ana Karen Sandoval-TalamantesINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.ORCID 0000-0002-2702-5625
Jair Antonio Tenorio-CastañoINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.ORCID 0000-0002-5308-2316
Fernando Santos-SimarroINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.
Carmen AdánINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.
María Fernández-ElviraINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.
Laura García-FernándezINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.
Yolanda MuñozINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.
Pablo LapunzinaINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.ORCID 0000-0002-6324-4825
Julián NevadoINGEMM (Institute of Medical and Molecular Genetics), La Paz University Hospital, IdiPAZ, 28046 Madrid, Spain.ORCID 0000-0001-5611-2659
Hospital Universitario La Paz · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autism spectrum disorder (ASD) is a set of neurodevelopmental disorders characterized by deficiencies in communication, social interaction, and repetitive and restrictive behaviors. The discovery of genetic involvement in the etiology of ASD has made this condition a strong candidate for genome-based diagnostic tests. Next-generation sequencing (NGS) is useful for the detection of variants in the sequence of different genes in ASD patients. Herein, we present the implementation of a personalized NGS panel for autism (AutismSeq) for patients with essential ASD over a prospective period of four years in the clinical routine of a tertiary hospital. The cohort is composed of 48 individuals, older than 3 years, who met the DSM-5 (The Diagnostic and Statistical Manual of Mental Disorders) diagnostic criteria for ASD. The NGS customized panel (AutismSeq) turned out to be a tool with good diagnostic efficacy in routine clinical care, where we detected 12 "pathogenic" (including pathogenic, likely pathogenic, and VUS (variant of uncertain significance) possibly pathogenic variations) in 11 individuals, and 11 VUS in 10 individuals, which had previously been negative for chromosomal microarray analysis and other previous genetic studies, such as karyotype, fragile-X, or MLPA/FISH (Multiplex Ligation dependent Probe Amplification/Fluorescence in situ hybridization) analysis. Our results demonstrate the high genetic and clinical heterogeneity of individuals with ASD and the current difficulty of molecular diagnosis. Our study also shows that an NGS-customized panel might be useful for diagnosing patients with essential/primary autism and that it is cost-effective for most genetic laboratories.

Indexed as

Autism Spectrum DisorderHigh-Throughput Nucleotide SequencingHumansIn Situ Hybridization, FluorescenceProspective StudiesTertiary Care Centersautistic spectrum disorderNGSpaneltertiary hospital

Identifiers

PMID38003033
PMCPMC10671584
OpenAlexW4388761847

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.