Evidence map›Paper›PMID 38001169›Full record

ArticleScientific reports2023

Detecting radio- and chemoresistant cells in 3D cancer co-cultures using chromatin biomarkers.

Tina Pekeč, Saradha Venkatachalapathy, Anne R Shim, Daniel Paysan, Michal Grzmil, Roger Schibli, Martin Béhé, G V Shivashankar

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Chromatin accessibility regulates age-dependent nuclear mechanotransduction.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tina Pekeč *Laboratory for Nanoscale Biology, Paul Scherrer Institute, Villigen, Switzerland.
Saradha Venkatachalapathy *Laboratory for Nanoscale Biology, Paul Scherrer Institute, Villigen, Switzerland.
Anne R ShimLaboratory for Nanoscale Biology, Paul Scherrer Institute, Villigen, Switzerland.
Daniel PaysanLaboratory for Nanoscale Biology, Paul Scherrer Institute, Villigen, Switzerland.
Michal GrzmilCenter for Radiopharmaceutical Sciences, Paul Scherrer Institute, Villigen, Switzerland.
Roger SchibliCenter for Radiopharmaceutical Sciences, Paul Scherrer Institute, Villigen, Switzerland.
Martin BéhéCenter for Radiopharmaceutical Sciences, Paul Scherrer Institute, Villigen, Switzerland.
G V ShivashankarLaboratory for Nanoscale Biology, Paul Scherrer Institute, Villigen, Switzerland. gshivasha@ethz.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The heterogenous treatment response of tumor cells limits the effectiveness of cancer therapy. While this heterogeneity has been linked to cell-to-cell variability within the complex tumor microenvironment, a quantitative biomarker that identifies and characterizes treatment-resistant cell populations is still missing. Herein, we use chromatin organization as a cost-efficient readout of the cells' states to identify subpopulations that exhibit distinct responses to radiotherapy. To this end, we developed a 3D co-culture model of cancer spheroids and patient-derived fibroblasts treated with radiotherapy. Using the model we identified treatment-resistant cells that bypassed DNA damage checkpoints and exhibited an aggressive growth phenotype. Importantly, these cells featured more condensed chromatin which primed them for treatment evasion, as inhibiting chromatin condensation and DNA damage repair mechanisms improved the efficacy of not only radio- but also chemotherapy. Collectively, our work shows the potential of using chromatin organization to cost-effectively study the heterogeneous treatment susceptibility of cells and guide therapeutic design.

Indexed as

ChromatinNeoplasmsBiomarkersCell Line, TumorCoculture TechniquesDNA RepairHumansSpheroids, CellularTumor MicroenvironmentBiomarkersChromatin

Identifiers

PMID38001169
PMCPMC10673941

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.