Evidence map›Paper›PMID 38001042›Full record

ArticleInflammatory bowel diseases2024

Differential Impact of Smoking on Methylome and Transcriptome in Crohn's Disease and Ulcerative Colitis.

Qi Yan Ang, Damian Plichta, Sean Kim, Iris Hyun-A Kim, Sadie Gregory, Yan Xia, Helena Lau, Ramnik Xavier, Ashwin N Ananthakrishnan

Open access · bronzeAbstract read
In one paragraph

Article in Inflammatory bowel diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Qi Yan AngBroad Institute, Cambridge, MA, USA.
Damian PlichtaBroad Institute, Cambridge, MA, USA.
Sean KimDivision of Gastroenterology, Massachusetts General Hospital, Boston, MA, USA.
Iris Hyun-A KimDivision of Gastroenterology, Massachusetts General Hospital, Boston, MA, USA.
Sadie GregoryDivision of Gastroenterology, Massachusetts General Hospital, Boston, MA, USA.
Yan XiaBroad Institute, Cambridge, MA, USA.
Helena LauDivision of Gastroenterology, Massachusetts General Hospital, Boston, MA, USA.
Ramnik XavierBroad Institute, Cambridge, MA, USA.
Ashwin N AnanthakrishnanDivision of Gastroenterology, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0002-9436-1821
Broad Institute · USMassachusetts General Hospital · USHarvard University · US

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Ramnik J Xavier · 1991 to 2026
$35.3M
Determinants of inception of inflammation in inflammatory bowel diseasesR01DK127171 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI ANANTHAKRISHNAN, ASHWIN N, XAVIER, RAMNIK J · 2021 to 2025
$5.4M
Differential impact of smoking on the transcriptome and epigenome in Crohn's disease and ulcerative colitis"R21DK127227 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI ANANTHAKRISHNAN, ASHWIN N · 2020 to 2021
$369k
Chleck Family FoundationHelmsley Charitable TrustNIDDK NIH HHS P30 DK043351NIDDK NIH HHS R01 DK127171NIDDK NIH HHS R21 DK127227NIH HHS R21 DK127227
6 · The paper itself

Abstract

backgroundSmoking is an environmental factor that differentially impacts Crohn's disease (CD) and ulcerative colitis (UC). The mechanism of impact of smoking on disease risk and clinical outcomes remains to be established.

methodsThis study used a prospective cohort of patients with CD or UC. Self-reported smoking status was validated using serum cotinine measurement. We profiled methylation changes in peripheral blood using the Illumina Methylation BeadChip. Transcriptomic profiling was performed on ileal and colonic tissue using an Illumina TruSeq platform. We compared the methylation and transcriptional changes in current, former, and never smokers stratified by disease type.

resultsOur cohort included 200 patients with CD or UC with methylation profiles and 160 with transcriptomic data. The mean serum cotinine level was higher in current compared with former or never smokers. Epigenetic changes common to both CD and UC included hypomethylation at AHRR. Smoking-associated MGAT3 hypomethylation was associated with severe disease course only in UC, while IER3 hypomethylation was associated with worse course only in CD. Smoking downregulated several inflammatory pathways in UC. Current smoking in CD but not in UC was associated with upregulation of several genes mediating Paneth cell function. Genes with opposite direction of effects in CD and UC include HSD3B2 and GSTA1.

conclusionsOur findings suggest both common and differential effects of cigarette smoking on CD and UC. Paneth cell dysfunction may mediate adverse impact of smoking on CD. Bile acid and oxidative stress pathways may be relevant for the differential effect of smoking on CD and UC.

Indexed as

Colitis, UlcerativeCrohn DiseaseDNA MethylationSmokingTranscriptomeAdultBasic Helix-Loop-Helix ProteinsCotinineEpigenesis, GeneticEpigenomeFemaleGene Expression ProfilingHumansMaleMiddle AgedProspective StudiesAHRR protein, humanBasic Helix-Loop-Helix ProteinsCotinineRepressor ProteinsCrohn’s diseaseepigeneticsmethylationRNA-seqsmokingulcerative colitis

Identifiers

PMID38001042
PMCPMC11145016
OpenAlexW4388989793

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.