Evidence map›Paper›PMID 37998899›Full record

ArticleJournal of fungi (Basel, Switzerland)2023

Evaluation of Different Gene Prediction Tools in

Theo N Kirkland, Sinem Beyhan, Jason E Stajich

Abstract read
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Computational Approaches for Discovering Virulence Factors inJournal of fungi (Basel, Switzerland) · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Theo N KirklandDepartment of Medicine, Division of Infectious Disease, School of Medicine, University of California, La Jolla, CA 92093, USA.ORCID 0000-0001-7908-7302
Sinem BeyhanDepartment of Medicine, Division of Infectious Disease, School of Medicine, University of California, La Jolla, CA 92093, USA.ORCID 0000-0003-0906-7538
Jason E StajichDepartment of Microbiology and Plant Pathology, Institute for Integrative Genome Biology, University of California-Riverside, Riverside, CA 92521, USA.ORCID 0000-0002-7591-0020

Funding

Innate immune mechanisms of the host response to CoccidioidesU19AI166059 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Joshua Fierer · 2022 to 2026
$10.0M
Interplay between the heat shock response and histidine kinase pathways in the thermally dimorphic fungal pathogen Histoplasma capsulatumR01AI137418 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI BEYHAN, SINEM · 2018 to 2023
$2.4M
NIAID NIH HHS R01 AI137418NIAID NIH HHS U19 AI166059
6 · The paper itself

Abstract

Gene prediction is required to obtain optimal biologically meaningful information from genomic sequences, but automated gene prediction software is imperfect. In this study, we compare the original annotation of the

Indexed as

Coccidioides spp.gene predictiongenomicshuman pathogenic fungi

Identifiers

PMID37998899
PMCPMC10672684

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.