Evidence map›Paper›PMID 37996965›Full record

ArticleProtein science : a publication of the Protein Society2024

Characterizing lysine acetylation of glucokinase.

Nour Fatema, Xinyu Li, Qinglei Gan, Chenguang Fan

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Crystal structures of Escherichia coli glucokinase and insights into phosphate binding.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
  4. Article
  5. Article
  6. Characterizing lysine acetylation of glucokinase.Protein science : a publication of the Protein Society · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nour FatemaCell and Molecular Biology Program, University of Arkansas, Fayetteville, Arkansas, USA.
Xinyu LiCell and Molecular Biology Program, University of Arkansas, Fayetteville, Arkansas, USA.
Qinglei GanDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas, USA.
Chenguang FanCell and Molecular Biology Program, University of Arkansas, Fayetteville, Arkansas, USA.ORCID 0000-0003-0662-1185
University of Arkansas at Fayetteville · US

Funding

Unraveling Gene-Environment Interactions Shaping Metabolism: A Multi-Omics Analysis in DrosophilaP20GM139768 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI Joanna Fiddler · 2021 to 2026
$17.0M
The role of lysine acetylation of human threonyl-tRNA synthetaseR15GM140433 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI FAN, CHENGUANG · 2021 to 2021
$450k
NIGMS NIH HHS P20 GM139768NIGMS NIH HHS R15 GM140433NIH HHS
6 · The paper itself

Abstract

Glucokinase (GK) catalyzes the phosphorylation of glucose to form glucose-6-phosphate as the substrate of glycolysis for energy production. Acetylation of lysine residues in Escherichia coli GK has been identified at multiple sites by a series of proteomic studies, but the impact of acetylation on GK functions remains largely unknown. In this study, we applied the genetic code expansion strategy to produce site-specifically acetylated GK variants which naturally exist in cells. Enzyme assays and kinetic analyses showed that lysine acetylation decreases the GK activity, mostly resulting from acetylation of K214 and K216 at the entrance of the active site, which impairs the binding of substrates. We also compared results obtained from the glutamine substitution method and the genetic acetyllysine incorporation approach, showing that glutamine substitution is not always effective for mimicking acetylated lysine. Further genetic studies as well as in vitro acetylation and deacetylation assays were performed to determine acetylation and deacetylation mechanisms, which showed that E. coli GK could be acetylated by acetyl-phosphate without enzymes and deacetylated by CobB deacetylase.

Indexed as

Escherichia coliLysineAcetylationGlucokinaseGlutamineProtein Processing, Post-TranslationalProteomicsGlucokinaseGlutamineLysinedeacetylasegenetic code expansionglucokinaseglycolysislysine acetylation

Identifiers

PMID37996965
PMCPMC10731539
OpenAlexW4388976657

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.