Evidence map›Paper›PMID 37996457›Full record

ArticleNature communications2023

Nod1-dependent NF-kB activation initiates hematopoietic stem cell specification in response to small Rho GTPases.

Xiaoyi Cheng, Radwa Barakat, Giulia Pavani, Masuma Khatun Usha, Rodolfo Calderon, Elizabeth Snella, Abigail Gorden, Yudi Zhang, Paul Gadue, Deborah L French and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. NF-κB-mediated developmental delay extends lifespan inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
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  10. Article
  11. Article
  12. Article
  13. Review
  14. Inflammation in Development and Aging: Insights from the Zebrafish Model.International journal of molecular sciences · 2024
    Review
  15. NOD1: a metabolic modulator.Frontiers in endocrinology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Xiaoyi ChengDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Radwa BarakatDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.ORCID 0000-0001-6242-7024
Giulia PavaniDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-2522-2684
Masuma Khatun UshaDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Rodolfo CalderonDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Elizabeth SnellaDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.ORCID 0000-0003-1482-2876
Abigail GordenDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Yudi ZhangDepartment of Statistics, Iowa State University, Ames, IA, 50011, USA.
Paul GadueDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Deborah L FrenchDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Karin S DormanDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.ORCID 0000-0003-3650-0018
Antonella FidanzaCentre for Regenerative Medicine, Institute for Regeneration and Repair, University of Edinburgh, EH16 4UU, Edinburgh, United Kingdom.
Clyde A CampbellDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Raquel Espin-PalazonDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA. espin@iastate.edu.ORCID 0000-0001-6033-5628
Iowa State University · USChildren's Hospital of Philadelphia · USMRC Centre for Regenerative Medicine · GB

Funding

Molecular dissection of Hematopoietic Stem Cell specification triggered by inflammatory mediatorsR01DK131162 · NIDDK · IOWA STATE UNIVERSITY · PI Raquel Espin Palazon · 2022 to 2026
$2.1M
The impact of inflammation on hematopoietic stem cell specificationK01DK115661 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ESPÍN PALAZÓN, RAQUEL · 2017 to 2021
$834k
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
In vivo assessment of granulin dependent myeloid cell formationR03DK125661 · NIDDK · IOWA STATE UNIVERSITY · PI ESPÍN PALAZÓN, RAQUEL · 2020 to 2021
$230k
NIDDK NIH HHS K01 DK115661NIDDK NIH HHS R01 DK131162NIDDK NIH HHS R03 DK125661NIH HHS S10 OD026929
6 · The paper itself

Abstract

Uncovering the mechanisms regulating hematopoietic specification not only would overcome current limitations related to hematopoietic stem and progenitor cell (HSPC) transplantation, but also advance cellular immunotherapies. However, generating functional human induced pluripotent stem cell (hiPSC)-derived HSPCs and their derivatives has been elusive, necessitating a better understanding of the developmental mechanisms that trigger HSPC specification. Here, we reveal that early activation of the Nod1-Ripk2-NF-kB inflammatory pathway in endothelial cells (ECs) primes them to switch fate towards definitive hemogenic endothelium, a pre-requisite to specify HSPCs. Our genetic and chemical embryonic models show that HSPCs fail to specify in the absence of Nod1 and its downstream kinase Ripk2 due to a failure on hemogenic endothelial (HE) programming, and that small Rho GTPases coordinate the activation of this pathway. Manipulation of NOD1 in a human system of definitive hematopoietic differentiation indicates functional conservation. This work establishes the RAC1-NOD1-RIPK2-NF-kB axis as a critical intrinsic inductor that primes ECs prior to HE fate switch and HSPC specification. Manipulation of this pathway could help derive a competent HE amenable to specify functional patient specific HSPCs and their derivatives for the treatment of blood disorders.

Indexed as

HemangioblastsInduced Pluripotent Stem CellsMonomeric GTP-Binding ProteinsCell DifferentiationHematopoiesisHematopoietic Stem CellsHumansNF-kappa BNF-kappa B p50 SubunitNod1 Signaling Adaptor Proteinrho GTP-Binding ProteinsMonomeric GTP-Binding ProteinsNF-kappa BNF-kappa B p50 SubunitNFKB1 protein, humanNOD1 protein, humanNod1 Signaling Adaptor Proteinrho GTP-Binding Proteins

Identifiers

PMID37996457
PMCPMC10667254
OpenAlexW4388938899

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.