Evidence map›Paper›PMID 37992291›Full record

ArticleNucleic acids research2024

TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat.

Marcio L Acencio, Miguel Vazquez, Konika Chawla, Astrid Lægreid, Martin Kuiper

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 68% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 0 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Marcio L AcencioDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, NO-7491, Norway.ORCID 0000-0002-8278-240X
Miguel VazquezBarcelona Supercomputing Center, Barcelona, 08034, Spain.ORCID 0000-0002-5713-1058
Konika ChawlaDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, NO-7491, Norway.
Astrid LægreidDepartment of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, NO-7491, Norway.ORCID 0000-0002-3941-4257
Martin KuiperDepartment of Biology, Norwegian University of Science and Technology, Trondheim, NO-7491, Norway.
Norwegian University of Science and Technology · NOBarcelona Supercomputing Center · ES

Funding

Norwegian University of Science and Technology
6 · The paper itself

Abstract

Prior knowledge about DNA-binding transcription factors (dbTFs), transcription co-regulators (coTFs) and general transcriptional factors (GTFs) is crucial for the study and understanding of the regulation of transcription. This is reflected by the many publications and database resources describing knowledge about TFs. We previously launched the TFCheckpoint database, an integrated resource focused on human, mouse and rat dbTFs, providing users access to a comprehensive overview of these proteins. Here, we describe TFCheckpoint 2.0 (https://www.tfcheckpoint.org/index.php), comprising 13 collections of dbTFs, coTFs and GTFs. TFCheckpoint 2.0 provides an easy and versatile cross-referencing system for users to view and download collections that may otherwise be cumbersome to find, compare and retrieve.

Indexed as

Databases, GeneticGene Expression RegulationTranscription FactorsAnimalsHumansInternetMiceRatsTranscription Factors

Identifiers

PMID37992291
PMCPMC10767992
OpenAlexW4388951843

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.