Evidence map›Paper›PMID 37992040›Full record

ArticlePLOS global public health2023

Risk factors for diarrheagenic Escherichia coli infection in children aged 6-24 months in peri-urban community, Nairobi, Kenya.

Noah O Okumu, Joseph J N Ngeranwa, Dishon M Muloi, Linnet Ochien'g, Arshnee Moodley, Christine Mutisya, Alice Kiarie, Joseph O Wasonga, Julie Watson, Maud Akissi Amon-Tanoh and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLOS global public health, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. First Insights on Resistance and Virulence Potential ofAntibiotics (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Noah O OkumuAnimal and Human Health Department, International Livestock Research Institute, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-5984-6444
Joseph J N NgeranwaDepartment of Biochemistry, Biotechnology and Microbiology, Kenyatta University, Nairobi, Kenya.
Dishon M MuloiAnimal and Human Health Department, International Livestock Research Institute, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-6236-2280
Linnet Ochien'gAnimal and Human Health Department, International Livestock Research Institute, Nairobi, Kenya.
Arshnee MoodleyAnimal and Human Health Department, International Livestock Research Institute, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-6469-3948
Christine MutisyaAnimal and Human Health Department, International Livestock Research Institute, Nairobi, Kenya.
Alice KiarieAnimal and Human Health Department, International Livestock Research Institute, Nairobi, Kenya.
Joseph O WasongaAnimal and Human Health Department, International Livestock Research Institute, Nairobi, Kenya.ORCID https://orcid.org/0000-0003-4576-0233
Julie WatsonDepartment of Disease Control, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Maud Akissi Amon-TanohDepartment of Disease Control, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Oliver CummingDepartment of Disease Control, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Elizabeth A J CookAnimal and Human Health Department, International Livestock Research Institute, Nairobi, Kenya.ORCID https://orcid.org/0000-0001-6081-8363
International Livestock Research Institute · KELondon School of Hygiene & Tropical Medicine · GBKenyatta University · KEUniversity of Copenhagen · DKUniversity of Liverpool · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli commonly inhabits the gut of humans and animals as part of their microbiota. Though mostly innocuous, some strains have virulence markers that make them pathogenic. This paper presents results of a cross-sectional epidemiological study examining prevalence of diarrheagenic E. coli (DEC) pathotypes in stool samples of asymptomatic healthy children (n = 540) in Dagoretti South subcounty, Nairobi, Kenya. E. coli was cultured and pathotyped using PCR to target specific virulence markers associated with Shiga-toxin, enteropathogenic, enterotoxigenic, enteroaggregative, entero-invasive and diffusely adherent E. coli. Overall prevalence of DEC pathotypes was 20.9% (113/540) with enteropathogenic E. coli being the most prevalent (34.1%), followed by enteroaggregative E. coli (23.5%) and Shiga-toxin producing E. coli (22.0%) among positive samples. We found evidence of co-infection with multiple pathotypes in 15% of the positive samples. Our models indicated that at the household level, carriage of DEC pathotypes in children was associated with age group [12-18 months] (OR 1.78; 95%CI 1.03-3.07; p = 0.04), eating matoke (mashed bananas) (OR 2.32; 95%CI 1.44-3.73; p = 0.001) and pulses/legumes (OR 1.74; 95%CI 1.01-2.99; p = 0.046) while livestock ownership or contact showed no significant association with DEC carriage (p>0.05). Our findings revealed significant prevalence of pathogenic DEC circulating among presumptive healthy children in the community. Since there has been no previous evidence of an association between any food type and DEC carriage, unhygienic handling, and preparation of matoke and pulses/legumes could be the reason for significant association with DEC carriage. Children 12-18 months old are more prone to DEC infections due to exploration and hand-to-mouth behavior. A detailed understanding is required on what proportion of positive cases developed severe symptomatology as well as fatal outcomes. The co-infection of pathotypes in the rapidly urbanizing environment needs to be investigated for hybrid or hetero-pathotype circulation that have been implicated in previous infection outbreaks.

Identifiers

PMID37992040
PMCPMC10664883
OpenAlexW4388906059

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.