Evidence map›Paper›PMID 37991880›Full record

ArticleACS synthetic biology2023

Evaluating DFHBI-Responsive RNA Light-Up Aptamers as Fluorescent Reporters for Gene Expression.

Alicia Climent-Catala, Ivan Casas-Rodrigo, Suhasini Iyer, Rodrigo Ledesma-Amaro, Thomas E Ouldridge

Open access · hybridAbstract read
In one paragraph

Article in ACS synthetic biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. RSC advances · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Alicia Climent-CatalaImperial College Centre for Synthetic Biology, London SW7 2AZ, U.K.ORCID 0000-0002-6210-1654
Ivan Casas-RodrigoDepartment of Biosystems Science and Engineering, ETH Zurich, CH-4058 Basel, Switzerland.ORCID 0009-0004-8764-0250
Suhasini IyerImperial College Centre for Synthetic Biology, London SW7 2AZ, U.K.ORCID 0009-0004-0835-5161
Rodrigo Ledesma-AmaroImperial College Centre for Synthetic Biology, London SW7 2AZ, U.K.ORCID 0000-0003-2631-5898
Thomas E OuldridgeImperial College Centre for Synthetic Biology, London SW7 2AZ, U.K.ORCID 0000-0001-8114-8602
Imperial College London · GBETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein-based fluorescent reporters have been widely used to characterize and localize biological processes in living cells. However, these reporters may have certain drawbacks for some applications, such as transcription-based studies or biological interactions with fast dynamics. In this context, RNA nanotechnology has emerged as a promising alternative, suggesting the use of functional RNA molecules as transcriptional fluorescent reporters. RNA-based aptamers can bind to nonfluorescent small molecules to activate their fluorescence. However, their performance as reporters of gene expression in living cells has not been fully characterized, unlike protein-based reporters. Here, we investigate the performance of three RNA light-up aptamers─F30-2xdBroccoli, tRNA-Spinach, and Tornado Broccoli─as fluorescent reporters for gene expression in

Indexed as

Aptamers, NucleotideRNAEscherichia coliFluorescent DyesGene ExpressionProteinsAptamers, NucleotideFluorescent DyesProteinsRNAdynamicsE. coligene expressionreportersRNA light-up aptamerssynthetic biology

Identifiers

PMID37991880
PMCPMC10729303
OpenAlexW4388895551

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.