Evidence map›Paper›PMID 37991376›Full record

ArticleMicrobiology spectrum2024

Diversity and conservation of the genome architecture of phages infecting the Alphaproteobacteria.

Jonathan R Hyde, Thomas Armond, Jacob A Herring, Sandra Hope, Julianne H Grose, Donald P Breakwell, Brett E Pickett

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Phenotypic characterization and genomic analysis ofCurrent research in food science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jonathan R HydeDepartment of Microbiology and Molecular Biology, Brigham Young University , Provo, Utah, USA.
Thomas ArmondDepartment of Microbiology and Molecular Biology, Brigham Young University , Provo, Utah, USA.
Jacob A HerringDepartment of Microbiology and Molecular Biology, Brigham Young University , Provo, Utah, USA.
Sandra HopeDepartment of Microbiology and Molecular Biology, Brigham Young University , Provo, Utah, USA.
Julianne H GroseDepartment of Microbiology and Molecular Biology, Brigham Young University , Provo, Utah, USA.ORCID 0000-0001-8816-6635
Donald P BreakwellDepartment of Microbiology and Molecular Biology, Brigham Young University , Provo, Utah, USA.
Brett E PickettDepartment of Microbiology and Molecular Biology, Brigham Young University , Provo, Utah, USA.ORCID 0000-0001-7930-8160
Brigham Young University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

importanceThis study reports the results of the largest analysis of genome sequences from phages that infect the Alphaproteobacteria class of bacterial hosts. We analyzed over 100 whole genome sequences of phages to construct dotplots, categorize them into genetically distinct clusters, generate a bootstrapped phylogenetic tree, compute protein orthologs, and predict packaging strategies. We determined that the phage sequences primarily cluster by the bacterial host family, phage morphotype, and genome size. We expect that the findings reported in this seminal study will facilitate future analyses that will improve our knowledge of the phages that infect these hosts.

Indexed as

BacteriophagesGenome, ViralGenomicsPhylogenyWhole Genome SequencingAlphaproteobacteriabacteriophagesclusterscomparative genomicsphylogenetic reconstructionprotein orthologs

Identifiers

PMID37991376
PMCPMC10783043
OpenAlexW4388901775

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.