Evidence map›Paper›PMID 37991367›Full record

ArticleJournal of virology2023

HIV-1 Gag co-localizes with euchromatin histone marks at the nuclear periphery.

Jordan Chang, Leslie J Parent

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. The biased adenosine-rich content of the HIV-1 genome serves as a molecular signature that facilitates efficient packaging.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Article
  4. Mechanism-guided engineering of a minimal biological particle for genome editing.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jordan ChangDepartment of Medicine, Pennsylvania State University College of Medicine, Hershey, Pennsylvania, USA.ORCID 0000-0002-6475-5555
Leslie J ParentDepartment of Medicine, Pennsylvania State University College of Medicine, Hershey, Pennsylvania, USA.ORCID 0000-0002-0431-9049
Pennsylvania State University · US

Funding

VIRUSES AND CANCERT32CA060395 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MEYERS, CRAIG M · 1994 to 2021
$4.3M
Role of biomolecular condensates in regulating HIV-1 viral ribonucleoprotein complex formation in the setting of substance use disorderR33DA053689 · NIDA · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI PARENT, LESLIE J · 2023 to 2025
$1.1M
Role of biomolecular condensates in regulating HIV-1 viral ribonucleoprotein complex formation in the setting of substance use disorderR21DA053689 · NIDA · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI PARENT, LESLIE J · 2021 to 2022
$360k
NCI NIH HHS T32 CA060395NIDA NIH HHS R21 DA053689NIDA NIH HHS R33 DA053689
6 · The paper itself

Abstract

importanceThe traditional view of retrovirus assembly posits that packaging of gRNA by HIV-1 Gag occurs in the cytoplasm or at the plasma membrane. However, our previous studies showing that HIV-1 Gag enters the nucleus and binds to USvRNA at transcription sites suggest that gRNA selection may occur in the nucleus. In the present study, we observed that HIV-1 Gag trafficked to the nucleus and co-localized with USvRNA within 8 hours of expression. In infected T cells (J-Lat 10.6) reactivated from latency and in a HeLa cell line stably expressing an inducible Rev-dependent HIV-1 construct, we found that Gag preferentially localized with euchromatin histone marks associated with enhancer and promoter regions near the nuclear periphery, which is the favored site HIV-1 integration. These observations support the innovative hypothesis that HIV-1 Gag associates with euchromatin-associated histones to localize to active transcription sites, promoting capture of newly synthesized gRNA for packaging.

Indexed as

Cell NucleusEuchromatingag Gene Products, Human Immunodeficiency VirusHistone CodeHistonesHIV-1Viral Genome PackagingActive Transport, Cell NucleusEnhancer Elements, GeneticHeLa CellsHumansPromoter Regions, Geneticrev Gene Products, Human Immunodeficiency VirusT-LymphocytesTranscription, GeneticVirus ActivationEuchromatingag Gene Products, Human Immunodeficiency VirusHistonesrev Gene Products, Human Immunodeficiency Virusrev protein, Human Immunodeficiency Virus-1euchromatin localizationHIV-1 GagHIV-1 latency reversalnuclear traffickingretrovirus assemblysubcellular fractionation

Identifiers

PMID37991367
PMCPMC10734548
OpenAlexW4388908989

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.