Evidence map›Paper›PMID 37989461›Full record

ArticleMitochondrion2024

Mitochondrial DNA mutation pathogenicity score and neurocognitive performance in persons with HIV.

Karen E Volpe, David C Samuels, Joanna L Elson, Jannetta S Steyn, Tebeb Gebretsadik, Ronald J Ellis, Robert K Heaton, Asha R Kallianpur, Scott Letendre, Todd Hulgan

Open access · greenAbstract read
In one paragraph

Article in Mitochondrion, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 83% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Karen E VolpeVanderbilt University Medical Center, Nashville, TN, USA.
David C SamuelsVanderbilt University School of Medicine, Nashville, TN, USA.
Joanna L ElsonBiosciences Institute, Newcastle University, Newcastle Upon Tyne, UK.
Jannetta S SteynBiosciences Institute, Newcastle University, Newcastle Upon Tyne, UK.
Tebeb GebretsadikVanderbilt University Medical Center, Nashville, TN, USA.
Ronald J EllisUniv. of California San Diego, San Diego, CA, USA.
Robert K HeatonUniv. of California San Diego, San Diego, CA, USA.
Asha R KallianpurCleveland Clinic/Lerner Research Institute, Cleveland, OH, USA.
Scott LetendreUniv. of California San Diego, San Diego, CA, USA.
Todd HulganVanderbilt University Medical Center, Nashville, TN, USA. Electronic address: todd.hulgan@vumc.org.
University of California San Diego · USVanderbilt University Medical Center · USNewcastle University · GBCleveland Clinic Lerner College of Medicine · USVanderbilt University · US

Funding

NNTC Data Coordinating CenterU24MH100925 · NIMH · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI FOX, HOWARD S, SHERMAN, SETH · 2013 to 2022
$9.5M
Age related determinants of HAND: A 12 year follow-up of CHARTER participantsR01MH107345 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HEATON, ROBERT KERNACHAN, LETENDRE, SCOTT L · 2015 to 2021
$7.9M
Iron and Mitochondrial Genomics in Neuro-inflammation and HAND: A CHARTER StudyR01MH095621 · NIMH · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HULGAN, TODD M, KALLIANPUR, ASHA R · 2011 to 2015
$3.1M
Midcareer Investigator Award in Patient-Oriented NeuroAIDS ResearchK24MH097673 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LETENDRE, SCOTT L · 2013 to 2017
$917k
CNS HIV ANTI-RETROVIRAL THERAPY EFFECTS RESEARCH /CHARTER/ -278022005-278022005N01MH022005 · NIMH · UNIVERSITY OF CA -SAN DIEGO · PI GRANT, IGOR · 2003 to 2006
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NIMH NIH HHS HHSN271201000030CNIMH NIH HHS HHSN271201000036CNIMH NIH HHS K24 MH097673NIMH NIH HHS N01 MH022005NIMH NIH HHS R01 MH095621NIMH NIH HHS R01 MH107345NIMH NIH HHS U24 MH100925
6 · The paper itself

Abstract

backgroundMitochondrial DNA (mtDNA) genetic variation is associated with neurocognitive (NC) impairment (NCI) in people with HIV (PWH). Other approaches use sequence conservation and protein structure to predict the impact of mtDNA variants on protein function. We examined predicted mtDNA variant pathogenicity in the CHARTER study using MutPred scores, hypothesizing that persons with higher scores (greater predicted pathogenicity) have more NCI.

methodsCHARTER included NC testing in PWH from 2003 to 2007. MutPred scores were assigned to CHARTER participants with mtDNA sequence; any score > 0.5 was considered potentially deleterious. Outcomes at cohort entry were NCI, defined by global and seven NC domain deficit scores, and by mean global and domain NC performance T-scores. Univariate and multivariable regression analyses assessed associations between having a deleterious variant and NCI. Additional models included estimated peripheral blood cell mtDNA copy number.

resultsData were available for 744 PWH (357 African ancestry; 317 European; 70 Hispanic). In the overall cohort, PWH having any potentially deleterious variant were less likely to have motor impairment (16 vs. 25 %, p = 0.001). In multivariable analysis, having a deleterious variant remained associated with lower likelihood of motor impairment (adjusted odds ratio 0.59 [95 % CI 0.41-0.88]; p = 0.009), and better motor performance by T-score (β 1.71 [0.31-3.10], p = 0.02). Associations persisted after adjustment for estimated mtDNA quantity.

conclusionsIn these PWH, having a potentially deleterious mtDNA variant was associated with less motor impairment. These unexpected findings suggest that potentially deleterious mtDNA variations may confer protection against impaired motor function by as yet unknown mechanisms.

Indexed as

DNA, MitochondrialHIV InfectionsHumansMitochondriaMutationVirulenceDNA, MitochondrialDeficitsDNAHIVMitochondrialNeurologic

Identifiers

PMID37989461
PMCPMC10872545
OpenAlexW4388805458

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.