Evidence map›Paper›PMID 37989312›Full record

ArticleCell host & microbe2023

Broad receptor tropism and immunogenicity of a clade 3 sarbecovirus.

Jimin Lee, Samantha K Zepeda, Young-Jun Park, Ashley L Taylor, Joel Quispe, Cameron Stewart, Elizabeth M Leaf, Catherine Treichel, Davide Corti, Neil P King and 2 more

Abstract read
In one paragraph

Article in Cell host & microbe, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
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  3. Novel AfricanJournal of virology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Jimin LeeDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Samantha K ZepedaDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Young-Jun ParkDepartment of Biochemistry, University of Washington, Seattle, WA, USA; Howard Hughes Medical Institute, Seattle, WA 98195, USA.
Ashley L TaylorDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Joel QuispeDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Cameron StewartDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Elizabeth M LeafDepartment of Biochemistry, University of Washington, Seattle, WA, USA; Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Catherine TreichelDepartment of Biochemistry, University of Washington, Seattle, WA, USA; Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Davide CortiHumabs Biomed SA, a Subsidiary of Vir. Biotechnology, 6500 Bellinzona, Switzerland.
Neil P KingDepartment of Biochemistry, University of Washington, Seattle, WA, USA; Institute for Protein Design, University of Washington, Seattle, WA 98195, USA.
Tyler N StarrDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
David VeeslerDepartment of Biochemistry, University of Washington, Seattle, WA, USA; Howard Hughes Medical Institute, Seattle, WA 98195, USA. Electronic address: dveesler@uw.edu.

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI KATHARINE S ULLMAN · 1986 to 2026
$72.6M
Centers for Research on Structural Biology of Infectious Diseases: Universal Influenza Vaccine Research75N93022C00036 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI STAKER, BART · 2022 to 2025
$21.7M
Structure-based design of broadly protective coronavirus vaccinesP01AI167966 · NIAID · UNIVERSITY OF WASHINGTON · PI Neil King, David Veesler · 2022 to 2026
$15.3M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Unraveling the bat humoral immune response against zoonotic viruses to guide the design of next-generation therapeuticsDP1AI158186 · NIAID · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2020 to 2024
$5.4M
Amnis ImageStreamX MarkII Imaging Flow CytometerS10OD026959 · OD · UNIVERSITY OF UTAH · PI MARVIN, JAMES E · 2020 to 2020
$517k
From genomics to natural language processing: A protected environment for research computing in the health scienceS10OD021644 · OD · UNIVERSITY OF UTAH · PI CHEATHAM, THOMAS E. · 2017 to 2017
$494k
Functional and antigenic evolution of SARS-related coronavirusesK99AI166250 · NIAID · FRED HUTCHINSON CANCER CENTER · PI STARR, TYLER NELSON · 2022 to 2022
$129k
Understanding spillover potential of European and African bat sarbecovirusesF31AI174573 · NIAID · UNIVERSITY OF WASHINGTON · PI ZEPEDA, SAMANTHA KATHLEEN · 2023 to 2024
$88k
NCI NIH HHS P30 CA042014NIAID NIH HHS 75N93022C00036NIAID NIH HHS DP1 AI158186NIAID NIH HHS F31 AI174573NIAID NIH HHS K99 AI166250NIAID NIH HHS P01 AI167966NIGMS NIH HHS T32 GM008268NIH HHS S10 OD021644NIH HHS S10 OD026959NIH HHS (Office of the Director) S10 OD032290
6 · The paper itself

Abstract

Although Rhinolophus bats harbor diverse clade 3 sarbecoviruses, the structural determinants of receptor tropism along with the antigenicity of their spike (S) glycoproteins remain uncharacterized. Here, we show that the African Rhinolophus bat clade 3 sarbecovirus PRD-0038 S has a broad angiotensin-converting enzyme 2 (ACE2) usage and that receptor-binding domain (RBD) mutations further expand receptor promiscuity and enable human ACE2 utilization. We determine a cryo-EM structure of the PRD-0038 RBD bound to Rhinolophus alcyone ACE2, explaining receptor tropism and highlighting differences with SARS-CoV-1 and SARS-CoV-2. Characterization of PRD-0038 S using cryo-EM and monoclonal antibody reactivity reveals its distinct antigenicity relative to SARS-CoV-2 and identifies PRD-0038 cross-neutralizing antibodies for pandemic preparedness. PRD-0038 S vaccination elicits greater titers of antibodies cross-reacting with vaccine-mismatched clade 2 and clade 1a sarbecoviruses compared with SARS-CoV-2 S due to broader antigenic targeting, motivating the inclusion of clade 3 antigens in next-generation vaccines for enhanced resilience to viral evolution.

Indexed as

ChiropteraSevere acute respiratory syndrome-related coronavirusAngiotensin-Converting Enzyme 2AnimalsAntibodies, ViralHumansSARS-CoV-2Spike Glycoprotein, CoronavirusTropismAngiotensin-Converting Enzyme 2Antibodies, ViralSpike Glycoprotein, CoronavirusACE2bat coronavirusesclade 3 sarbecoviruscryo-EMPRD-0038receptor tropismSARS-CoV-2spike glycoproteinvaccinezoonotic spillover

Identifiers

PMID37989312
PMCPMC10913562

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.