Evidence map›Paper›PMID 37988222›Full record

ArticleAging2023

Joint effect of RRP9 and DDX21 on development of colorectal cancer and keloid.

Hao Liu, Xiaoqian Chi, Ning Yang, Mengjie Shan, Yiding Xiao, Mingzi Zhang, Yan Hao, Shiyang Hou, Yabin Liu, Youbin Wang

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Hao LiuDepartment of Plastic Surgery, Peking Union Medical College Hospital, Beijing, China.
Xiaoqian ChiDepartment of General Surgery, Beijing Rehabilitation Hospital, Capital Medical University, Beijing, China.
Ning YangDepartment of General Surgery, The First Affiliated Hospital, Hebei Medical University, Shijiazhuang, China.
Mengjie ShanDepartment of Plastic Surgery, Peking Union Medical College Hospital, Beijing, China.
Yiding XiaoDepartment of Plastic Surgery, Peking Union Medical College Hospital, Beijing, China.
Mingzi ZhangDepartment of Plastic Surgery, Peking Union Medical College Hospital, Beijing, China.
Yan HaoDepartment of Plastic Surgery, Peking Union Medical College Hospital, Beijing, China.
Shiyang HouDepartment of General Surgery, Beijing Rehabilitation Hospital, Capital Medical University, Beijing, China.
Yabin LiuDepartment of General Surgery, The Fourth Affiliated Hospital, Hebei Medical University, Shijiazhuang, China.
Youbin WangDepartment of Plastic Surgery, Peking Union Medical College Hospital, Beijing, China.
Peking Union Medical College Hospital · CNCapital Medical University · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNFourth Hospital of Hebei Medical University · CNHebei Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundColorectal cancer (CRC) is a common malignancy in the gastrointestinal tract. Keloid refers to abnormal scar tissue that forms on the skin or mucous membrane. The relationship between RRP9 and DDX21 and the two diseases is unclear.

methodsDownload the colorectal cancer dataset GSE134834, GSE206800, GSE209892 and keloid dataset GSE44270 from the GEO database. Differentially expressed genes (DEGs) were screened and weighted gene co-expression network analysis (WGCNA) was performed. The construction and analysis of protein-protein interaction (PPI) network, functional enrichment analysis, gene set enrichment analysis (GSEA). Gene expression heat map was drawn. The comparative toxicogenomics database (CTD) analysis was performed to find diseases most related to core genes. TargetScan screened miRNAs that regulated central DEGs. We conducted experimental validation using Western blotting and Polymerase Chain Reaction (PCR).

resultsIn the colorectal cancer dataset and the scar tissue dataset, we identified 1380 DEGs and 1000 DEGs, respectively. The enrichment pattern for scar tissue was similar to that of colorectal cancer. We identified two core genes, RRP9 and DDX21. CTD analysis indicated that RRP9 and DDX21 are associated with proliferation, scar tissue, colorectal tumors, scleroderma, and inflammation. We found that the core genes (RRP9 and DDX21) were highly expressed in colorectal cancer and scar tissue samples, while their expression was lower in normal samples. This was further validated through Western blotting (WB) and Polymerase Chain Reaction (PCR).

conclusionsThe higher the expression of RRP9 and DDX21 in colorectal cancer and keloid, the worse the prognosis.

Indexed as

Colorectal NeoplasmsKeloidMicroRNAsComputational BiologyDEAD-box RNA HelicasesGene Expression ProfilingHumansProtein Interaction MapsDDX21 protein, humanDEAD-box RNA HelicasesMicroRNAsbiomarkerscolorectal cancerDDX21keloidRRP9

Identifiers

PMID37988222
PMCPMC10781455
OpenAlexW4388824890

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.