Evidence map›Paper›PMID 37987553›Full record

ArticleMolecular biology and evolution2023

Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation.

Axel Jensen, Frances Swift, Dorien de Vries, Robin M D Beck, Lukas F K Kuderna, Sascha Knauf, Idrissa S Chuma, Julius D Keyyu, Andrew C Kitchener, Kyle Farh and 5 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Evolution of CEACAM pathogen decoy receptors in primates.European journal of clinical investigation · 2024
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 12 institutions in 6 countries.

Axel JensenDepartment of Ecology and Genetics, Animal Ecology, Uppsala University, Uppsala SE-75236, Sweden.ORCID 0000-0003-1766-560X
Frances SwiftSchool of Biological Sciences, Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK.
Dorien de VriesSchool of Science, Engineering & Environment, University of Salford, Salford M5 4WT, UK.
Robin M D BeckSchool of Science, Engineering & Environment, University of Salford, Salford M5 4WT, UK.
Lukas F K KudernaIllumina Artificial Intelligence Laboratory, Illumina Inc., Foster City, CA 94404, USA.
Sascha KnaufInstitute of International Animal Health/One Health, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Greifswald - Insel Riems 17493, Germany.
Idrissa S ChumaTanzania National Parks, Arusha, Tanzania.
Julius D KeyyuTanzania Wildlife Research Institute (TAWIRI), Arusha, Tanzania.
Andrew C KitchenerDepartment of Natural Sciences, National Museums Scotland, Edinburgh EH1 1JF, UK.ORCID 0000-0003-2594-0827
Kyle FarhIllumina Artificial Intelligence Laboratory, Illumina Inc., Foster City, CA 94404, USA.
Jeffrey RogersHuman Genome Sequencing Center and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.ORCID 0000-0002-7374-6490
Tomas Marques-BonetInstitute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona 08003, Spain.
Kate M DetwilerDepartment of Biological Sciences, Florida Atlantic University, Boca Raton, FL, USA.
Christian RoosGene Bank of Primates and Primate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, Göttingen 37077, Germany.
Katerina GuschanskiDepartment of Ecology and Genetics, Animal Ecology, Uppsala University, Uppsala SE-75236, Sweden.ORCID 0000-0002-8493-5457
Illumina (United States) · USUniversity of Salford · GBUppsala University · SEBaylor College of Medicine · USFlorida Atlantic University · USFriedrich-Loeffler-Institut · DEGerman Primate Center · DEInstitució Catalana de Recerca i Estudis Avançats · ESNational Museums Scotland · GBTanzania National Parks · TZTanzania Wildlife Research Institute · TZUniversity of Edinburgh · GB

Funding

Swedish Research Council
6 · The paper itself

Abstract

Understanding the drivers of speciation is fundamental in evolutionary biology, and recent studies highlight hybridization as an important evolutionary force. Using whole-genome sequencing data from 22 species of guenons (tribe Cercopithecini), one of the world's largest primate radiations, we show that rampant gene flow characterizes their evolutionary history and identify ancient hybridization across deeply divergent lineages that differ in ecology, morphology, and karyotypes. Some hybridization events resulted in mitochondrial introgression between distant lineages, likely facilitated by cointrogression of coadapted nuclear variants. Although the genomic landscapes of introgression were largely lineage specific, we found that genes with immune functions were overrepresented in introgressing regions, in line with adaptive introgression, whereas genes involved in pigmentation and morphology may contribute to reproductive isolation. In line with reports from other systems that hybridization might facilitate diversification, we find that some of the most species-rich guenon clades are of admixed origin. This study provides important insights into the prevalence, role, and outcomes of ancestral hybridization in a large mammalian radiation.

Indexed as

Biological EvolutionGene FlowAnimalsGenomeGenomicsHybridization, GeneticMammalsPhylogenyPrimatesancient hybridizationevolutionary genomicsguenonmammalian radiationphylogenomicsspeciation

Identifiers

PMID37987553
PMCPMC10691879
OpenAlexW4388845223

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.