Evidence map›Paper›PMID 37987447›Full record

ArticleEMBO reports2023

Microautophagy regulated by STK38 and GABARAPs is essential to repair lysosomes and prevent aging.

Monami Ogura, Tatsuya Kaminishi, Takayuki Shima, Miku Torigata, Nao Bekku, Keisuke Tabata, Satoshi Minami, Kohei Nishino, Akiko Nezu, Maho Hamasaki and 3 more

Open access · hybridAbstract read
In one paragraph

Article in EMBO reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 34 citations in OpenAlex.

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  20. Lysosomal Repair in Health and Disease.Journal of cellular physiology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Monami OguraDepartment of Intracellular Membrane Dynamics, Graduate School of Frontier Biosciences, Osaka University, Osaka, Japan.ORCID 0009-0000-3311-7836
Tatsuya KaminishiDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.ORCID 0000-0001-5056-1074
Takayuki ShimaDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.
Miku TorigataDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.
Nao BekkuDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.
Keisuke TabataDepartment of Intracellular Membrane Dynamics, Graduate School of Frontier Biosciences, Osaka University, Osaka, Japan.ORCID 0000-0001-6776-1689
Satoshi MinamiDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.
Kohei NishinoFujii Memorial Institute of Medical Sciences, Institute of Advanced Medical Sciences, Tokushima University, Tokushima, Japan.
Akiko NezuDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.ORCID 0000-0002-6902-6749
Maho HamasakiDepartment of Intracellular Membrane Dynamics, Graduate School of Frontier Biosciences, Osaka University, Osaka, Japan.
Hidetaka KosakoFujii Memorial Institute of Medical Sciences, Institute of Advanced Medical Sciences, Tokushima University, Tokushima, Japan.ORCID 0000-0003-3228-6368
Tamotsu YoshimoriDepartment of Intracellular Membrane Dynamics, Graduate School of Frontier Biosciences, Osaka University, Osaka, Japan.ORCID 0000-0001-9787-3788
Shuhei NakamuraDepartment of Intracellular Membrane Dynamics, Graduate School of Frontier Biosciences, Osaka University, Osaka, Japan.ORCID 0000-0002-1488-8317
The University of Osaka · JPUbe Frontier University · JPTokushima University · JP

Funding

Astellas Foundation for Research on Metabolic DisordersJapan Agency for Medical Research and Development (AMED) JP22gm1410014MEXT | Japan Society for the Promotion of Science (JSPS) 21H02428MEXT | Japan Society for the Promotion of Science (JSPS) 21J21647MEXT | Japan Society for the Promotion of Science (JSPS) 22H04982MEXT | Japan Society for the Promotion of Science (JSPS) 23K18140MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR17H6Ministry of Education, Culture, Sports, Science and Technology (MEXT) 21H05145Mitsubishi Foundation (The Mitsubishi Foundation)Mochida Memorial Foundation for Medical and Pharmaceutical Research ( )NOVARTIS Foundation (Japan) for the Promotion of Science (NOVARTIS Foundation (Japan))Takeda Science Foundation (TSF)
6 · The paper itself

Abstract

Lysosomes are degradative organelles and signaling hubs that maintain cell and tissue homeostasis, and lysosomal dysfunction is implicated in aging and reduced longevity. Lysosomes are frequently damaged, but their repair mechanisms remain unclear. Here, we demonstrate that damaged lysosomal membranes are repaired by microautophagy (a process termed "microlysophagy") and identify key regulators of the first and last steps. We reveal the AGC kinase STK38 as a novel microlysophagy regulator. Through phosphorylation of the scaffold protein DOK1, STK38 is specifically required for the lysosomal recruitment of the AAA+ ATPase VPS4, which terminates microlysophagy by promoting the disassembly of ESCRT components. By contrast, microlysophagy initiation involves non-canonical lipidation of ATG8s, especially the GABARAP subfamily, which is required for ESCRT assembly through interaction with ALIX. Depletion of STK38 and GABARAPs accelerates DNA damage-induced cellular senescence in human cells and curtails lifespan in C. elegans, respectively. Thus, microlysophagy is regulated by STK38 and GABARAPs and could be essential for maintaining lysosomal integrity and preventing aging.

Indexed as

Caenorhabditis elegansMicroautophagyAnimalsApoptosis Regulatory ProteinsAutophagyEndosomal Sorting Complexes Required for TransportHumansIntracellular MembranesLysosomesMicrotubule-Associated ProteinsProtein Serine-Threonine KinasesApoptosis Regulatory ProteinsEndosomal Sorting Complexes Required for TransportGABARAP protein, humanMicrotubule-Associated ProteinsProtein Serine-Threonine KinasesSTK38 protein, humanESCRTlysosomemicroautophagynon-canonical ATG8 lipidation

Identifiers

PMID37987447
PMCPMC10702834
OpenAlexW4388869802

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.