Evidence map›Paper›PMID 37987001›Full record

ArticlebioRxiv : the preprint server for biology2023

Ammonia-oxidizing archaea and bacteria differentially contribute to ammonia oxidation in soil under precipitation gradients and land legacy.

Soumyadev Sarkar, Anna Kazarina, Paige M Hansen, Kaitlyn Ward, Christopher Hargreaves, Nicholas Reese, Qinghong Ran, Willow Kessler, Ligia F T de Souza, Terry D Loecke and 5 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Soumyadev SarkarDivision of Biology, Kansas State University, Manhattan, Kansas, USA.ORCID 0000-0003-4177-7484
Anna KazarinaDivision of Biology, Kansas State University, Manhattan, Kansas, USA.
Paige M HansenPMH Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado USA.
Kaitlyn WardDivision of Biology, Kansas State University, Manhattan, Kansas, USA.
Christopher HargreavesDivision of Biology, Kansas State University, Manhattan, Kansas, USA.
Nicholas ReeseDivision of Biology, Kansas State University, Manhattan, Kansas, USA.
Qinghong RanDivision of Biology, Kansas State University, Manhattan, Kansas, USA.
Willow KesslerDepartment of Ecology & Evolutionary Biology, University of Kansas, Lawrence, Kansas, USA.
Ligia F T de SouzaDepartment of Ecology & Evolutionary Biology, University of Kansas, Lawrence, Kansas, USA.
Terry D LoeckeKansas Biological Survey and Center for Ecological Research, University of Kansas, Lawrence, Kansas, USA.
Marcos V M SartoDepartment of Agronomy, Kansas State University, Manhattan, Kansas, USA.
Charles W RiceDepartment of Agronomy, Kansas State University, Manhattan, Kansas, USA.
Lydia H ZeglinDivision of Biology, Kansas State University, Manhattan, Kansas, USA.
Benjamin A SikesDepartment of Ecology & Evolutionary Biology, University of Kansas, Lawrence, Kansas, USA.
Sonny T M LeeDivision of Biology, Kansas State University, Manhattan, Kansas, USA.
Kansas State University · USUniversity of Kansas · USColorado State University · US

Funding

RADx-UP: Improving the Response of Local Urban and Rural Communities to Disparities in Covid-19 TestingUL1TR002366 · NCATS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Mario Castro, JAMES STEVEN LEEDER · 2017 to 2026
$44.3M
Using PCORnet to Expand the DS-CONNECT Cohort Through Healthcare System Recruitment, Incorporating Electronic Health Records, and Assessing Self-DeterminationU54HD090216 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI COLOMBO, JOHN A. · 2016 to 2020
$6.2M
Molecular Regulation of Cell Development and Differentiation Phase III COBREP30GM122731 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ABRAHAMSON, DALE R · 2017 to 2021
$5.6M
High Throughput Sequencing System for KUMC Genomics CoreS10OD021743 · OD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SMITH, PETER G · 2017 to 2017
$493k
NCATS NIH HHS UL1 TR002366NICHD NIH HHS U54 HD090216NIGMS NIH HHS P30 GM122731NIH HHS S10 OD021743
6 · The paper itself

Abstract

Background: Global change has accelerated the nitrogen cycle. Soil nitrogen stock degradation by microbes leads to the release of various gases, including nitrous oxide (N Results: We resolved 28 AOA and AOB metagenome assembled genomes (MAGs) and found that they were significantly higher in drier environments and differentially abundant in different land use legacies. We further dissected AOA and AOB functional potentials to understand their contribution to nitrogen transformation capabilities. We identified the involvement of stress response genes, differential metabolic functional potentials, and subtle population dynamics under different environmental parameters for AOA and AOB. We observed that AOA MAGs lacked a canonical membrane-bound electron transport chain and F-type ATPase but possessed A/A-type ATPase, while AOB MAGs had a complete complex III module and F-type ATPase, suggesting differential survival strategies of AOA and AOB. Conclusions: The outcomes from this study will enable us to comprehend how drought-like environments and land use legacies could impact AOA- and AOB-driven nitrogen transformations in soil.

Indexed as

Ammoniaarchaeabacteriaoxidationsoil

Identifiers

PMID37987001
PMCPMC10659370
OpenAlexW4388615777

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.