Evidence map›Paper›PMID 37986799›Full record

ArticlebioRxiv : the preprint server for biology2023

Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing.

Segewkal Heruye, Jered Myslinski, Chao Zeng, Amy Zollman, Shinichi Makino, Azuma Nanamatsu, Quoseena Mir, Sarath Chandra Janga, Emma H Doud, Michael T Eadon and 5 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Segewkal HeruyeDepartment of Medicine, Indiana University School of Medicine.ORCID 0000-0001-7385-1293
Jered MyslinskiDepartment of Medicine, Indiana University School of Medicine.ORCID 0000-0003-2760-8692
Chao ZengFaculty of Science and Engineering, Waseda University, Tokyo.ORCID 0000-0002-6130-2438
Amy ZollmanDepartment of Medicine, Indiana University School of Medicine.
Shinichi MakinoDepartment of Medicine, Indiana University School of Medicine.
Azuma NanamatsuDepartment of Medicine, Indiana University School of Medicine.ORCID 0000-0002-8512-0161
Quoseena MirLuddy School of Informatics, Computing, and Engineering, Indiana University.ORCID 0000-0002-5420-2340
Sarath Chandra JangaLuddy School of Informatics, Computing, and Engineering, Indiana University.ORCID 0000-0001-7351-6268
Emma H DoudDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine.
Michael T EadonDepartment of Medicine, Indiana University School of Medicine.ORCID 0000-0003-3066-2876
Bernhard MaierDepartment of Medicine, Indiana University School of Medicine.
Michiaki HamadaFaculty of Science and Engineering, Waseda University, Tokyo.ORCID 0000-0001-9466-1034
Tuan M TranDepartment of Medicine, Indiana University School of Medicine.ORCID 0000-0002-1928-861X
Pierre C DagherDepartment of Medicine, Indiana University School of Medicine.ORCID 0000-0003-3321-5561
Takashi HatoDepartment of Medicine, Indiana University School of Medicine.ORCID 0000-0002-0446-6575
Indiana University School of MedicineIndiana University · USRichard L. Roudebush VA Medical Center · USWaseda University · JP

Funding

UAB-UCSD O'Brien Core Center for Acute Kidney Injury ResearchP30DK079337 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI CURTIS, LISA M · 2008 to 2022
$18.3M
Integrated spatial interrogation of cellular and molecular signatures of human kidney diseaseU01DK114923 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI Tarek Maurice Ashkar, Pierre C Dagher · 2022 to 2026
$5.4M
Endotoxin preconditioning as a model to uncover protective pathways in sepsis-induced renal injury.R01DK107623 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI Pierre C Dagher · 2016 to 2026
$4.4M
The role of antiviral programs in bacterial sepsisR01AI148282 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI HATO, TAKASHI · 2020 to 2024
$2.0M
Protective pathways in sepsis-induced renal injuryI01BX002901 · VA · RLR VA MEDICAL CENTER · PI Takashi Hato · 2016 to 2026
–
BLRD VA I01 BX002901NIAID NIH HHS R01 AI148282NIDDK NIH HHS P30 DK079337NIDDK NIH HHS R01 DK107623NIDDK NIH HHS U01 DK114923
6 · The paper itself

Abstract

The progression of kidney disease varies among individuals, but a general methodology to quantify disease timelines is lacking. Particularly challenging is the task of determining the potential for recovery from acute kidney injury following various insults. Here, we report that quantitation of post-transcriptional adenosine-to-inosine (A-to-I) RNA editing offers a distinct genome-wide signature, enabling the delineation of disease trajectories in the kidney. A well-defined murine model of endotoxemia permitted the identification of the origin and extent of A-to-I editing, along with temporally discrete signatures of double-stranded RNA stress and Adenosine Deaminase isoform switching. We found that A-to-I editing of Antizyme Inhibitor 1 (AZIN1), a positive regulator of polyamine biosynthesis, serves as a particularly useful temporal landmark during endotoxemia. Our data indicate that AZIN1 A-to-I editing, triggered by preceding inflammation, primes the kidney and activates endogenous recovery mechanisms. By comparing genetically modified human cell lines and mice locked in either A-to-I edited or uneditable states, we uncovered that AZIN1 A-to-I editing not only enhances polyamine biosynthesis but also engages glycolysis and nicotinamide biosynthesis to drive the recovery phenotype. Our findings implicate that quantifying AZIN1 A-to-I editing could potentially identify individuals who have transitioned to an endogenous recovery phase. This phase would reflect their past inflammation and indicate their potential for future recovery.

Identifiers

PMID37986799
PMCPMC10659426
OpenAlexW4388571769

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.