ArticlebioRxiv : the preprint server for biology2024
Shaping human gut community assembly and butyrate production by controlling the arginine dihydrolase pathway.
Yiyi Liu, Yu-Yu Cheng, Jaron Thompson, Zhichao Zhou, Eugenio I Vivas, Matthew F Warren, Federico E Rey, Karthik Anantharaman, Ophelia S Venturelli
Open access · greenAbstract readPreprint
In one paragraphArticle in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
2 · The registryThe trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
3 · Its place in the literatureWho cites it
0 citing papers in PubMed, 2 citations in OpenAlex.
No citing paper in PubMed yet.
4 · The recordCorrections and comments
5 · Who and what moneyAuthors and funding
9 authors at 1 institution in 1 country.
Yiyi LiuDepartment of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison WI 53706.
Yu-Yu ChengDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706.
Jaron ThompsonDepartment of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison WI 53706.
Zhichao ZhouDepartment of Bacteriology, University of Wisconsin-Madison, WI 53706.
Eugenio I VivasDepartment of Bacteriology, University of Wisconsin-Madison, WI 53706.
Federico E ReyDepartment of Bacteriology, University of Wisconsin-Madison, WI 53706.
Ophelia S VenturelliDepartment of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison WI 53706.ORCID 0000-0003-2200-1963 University of Wisconsin–Madison · US
Funding
Elucidating the molecular and ecological design principles of stability and assembly of the human gut microbiotaR35GM124774 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Ophelia Venturelli · 2017 to 2026
$2.9MModel-guided design of next-generation bacterial therapeutics to treat cardiovascular diseaseR01EB030340 · NIBIB · UNIVERSITY OF WISCONSIN-MADISON · PI REY, FEDERICO E, ROMERO, PHILIP ANTHONY · 2020 to 2023
$2.8MCOMPUTATIONAL FRAMEWORKS FOR PHAGE DISCOVERY, ECOLOGY, AND DYNAMICS FROM METAGENOMESR35GM143024 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ANANTHARAMAN, KARTHIK · 2021 to 2025
$1.9MNIBIB NIH HHS R01 EB030340NIGMS NIH HHS R35 GM124774NIGMS NIH HHS R35 GM143024
6 · The paper itselfAbstract
The arginine dihydrolase pathway (
Indexed as
butyratedynamic computational modelhuman gut microbiomepH responsesynthetic biologysynthetic microbial communitysystems biology
Identifiers
PMID37986770
PMCPMC10659395
OpenAlexW4315487502
What OpenQuestion holds
Textmetadata
LicenceCC BY-NC-ND
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