Evidence map›Paper›PMID 37985858›Full record

ArticleNature immunology2024

BRWD1 orchestrates small pre-B cell chromatin topology by converting static to dynamic cohesin.

Malay Mandal, Mark Maienschein-Cline, Yeguang Hu, Azam Mohsin, Margaret L Veselits, Nathaniel E Wright, Michael K Okoreeh, Young Me Yoon, Jacob Veselits, Katia Georgopoulos and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Malay MandalDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA. mmandal@bsd.uchicago.edu.ORCID http://orcid.org/0000-0002-0451-3896
Mark Maienschein-ClineCore for Research Informatics, University of Illinois at Chicago, Chicago, IL, USA.
Yeguang HuCutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA.
Azam MohsinProgram in Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Margaret L VeselitsDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.
Nathaniel E WrightDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-7006-4040
Michael K OkoreehDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.
Young Me YoonDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-8312-7864
Jacob VeselitsDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA.
Katia GeorgopoulosCutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA, USA.ORCID http://orcid.org/0000-0002-8963-4258
Marcus R ClarkDepartment of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, IL, USA. mclark@uchicago.edu.ORCID http://orcid.org/0000-0003-4747-0387
University of Chicago · USHarvard University · USStanford University · USUniversity of Illinois Chicago · US

Funding

Ruth L. Kirschstein National Research Service Award (NRSA) Institutional Research Training Grant (Parent T32)T32HD007009 · NICHD · UNIVERSITY OF CHICAGO · PI NANCY B SCHWARTZ · 1985 to 2026
$13.0M
Medical Scientist National Research Service AwardT32GM150375 · NIGMS · UNIVERSITY OF CHICAGO · PI Raghavendra G Mirmira · 2023 to 2026
$5.5M
Role of CXCR4 in immunoglobulin light chain recombinationR01AI150860 · NIAID · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY, MANDAL, MALAY · 2021 to 2025
$2.9M
The epigenetic reader BRWD1 in peripheral adaptive immunityR01AI143778 · NIAID · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 2019 to 2023
$2.4M
REGULATION OF CD3D GENE BY T TRANSCRIPTION FACTOR IKAROSR01AI033062 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI GEORGOPOULOS, KATIA · 1993 to 2000
$248k
The role of BRWD1 to establish epigenetic states for germinal center initiation, maintenance, and exitF30AI174324 · NIAID · UNIVERSITY OF CHICAGO · PI Nathaniel Edwin Wright · 2023 to 2026
$216k
NIAID NIH HHS F30 AI174324NIAID NIH HHS R01 AI033062NIAID NIH HHS R01 AI143778NIAID NIH HHS R01 AI150860NICHD NIH HHS T32 HD007009NIGMS NIH HHS T32 GM150375
6 · The paper itself

Abstract

Lymphocyte development consists of sequential and mutually exclusive cell states of proliferative selection and antigen receptor gene recombination. Transitions between each state require large, coordinated changes in epigenetic landscapes and transcriptional programs. How this occurs remains unclear. Here we demonstrate that in small pre-B cells, the lineage and stage-specific epigenetic reader bromodomain and WD repeat-containing protein 1 (BRWD1) reorders three-dimensional chromatin topology to affect the transition between proliferative and gene recombination molecular programs. BRWD1 regulated the switch between poised and active enhancers interacting with promoters, and coordinated this switch with Igk locus contraction. BRWD1 did so by converting chromatin-bound static to dynamic cohesin competent to mediate long-range looping. ATP-depletion revealed cohesin conversion to be the main energetic mechanism dictating dynamic chromatin looping. Our findings provide a new mechanism of cohesin regulation and reveal how cohesin function can be dictated by lineage contextual mechanisms to facilitate specific cell fate transitions.

Indexed as

ChromatinCohesinsCell Cycle ProteinsCell DifferentiationGene Expression RegulationPrecursor Cells, B-LymphoidCell Cycle ProteinsChromatinCohesins

Identifiers

PMID37985858
PMCPMC11542586
OpenAlexW4388834924

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.