Evidence map›Paper›PMID 37984437›Full record

ArticleThe EMBO journal2023

An extended Tudor domain within Vreteno interconnects Gtsf1L and Ago3 for piRNA biogenesis in Bombyx mori.

Alfred W Bronkhorst, Chop Y Lee, Martin M Möckel, Sabine Ruegenberg, Antonio M de Jesus Domingues, Shéraz Sadouki, Rossana Piccinno, Tetsutaro Sumiyoshi, Mikiko C Siomi, Lukas Stelzl and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Alfred W BronkhorstBiology of Non-coding RNA Group, Institute of Molecular Biology, Mainz, Germany.ORCID 0000-0001-6402-574X
Chop Y LeeInternational PhD Programme on Gene Regulation, Epigenetics & Genome Stability, Mainz, Germany.ORCID 0000-0002-8907-6831
Martin M MöckelProtein Production Core Facility, Institute of Molecular Biology, Mainz, Germany.
Sabine RuegenbergProtein Production Core Facility, Institute of Molecular Biology, Mainz, Germany.ORCID 0000-0001-5292-9610
Antonio M de Jesus DominguesBiology of Non-coding RNA Group, Institute of Molecular Biology, Mainz, Germany.ORCID 0000-0002-1803-1863
Shéraz SadoukiBiology of Non-coding RNA Group, Institute of Molecular Biology, Mainz, Germany.
Rossana PiccinnoMicroscopy Core Facility, Institute of Molecular Biology, Mainz, Germany.
Tetsutaro SumiyoshiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Mikiko C SiomiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-6149-4396
Lukas StelzlFaculty of Biology, Johannes Gutenberg University Mainz, Mainz, Germany.ORCID 0000-0002-5348-0277
Katja LuckIntegrative Systems Biology Group, Institute of Molecular Biology, Mainz, Germany.ORCID 0000-0003-2336-9225
René F KettingBiology of Non-coding RNA Group, Institute of Molecular Biology, Mainz, Germany.ORCID 0000-0001-6161-5621
Institute of Molecular Biology · DEJohannes Gutenberg University Mainz · DEProtein Express (United States) · USThe University of Tokyo · JPEuropean Molecular Biology Laboratory · DEGene Therapy Laboratory · FR

Funding

Deutsche Forschungsgemeinschaft (DFG) 464588647Deutsche Forschungsgemeinschaft (DFG) 497669232Deutsche Forschungsgemeinschaft (DFG) DFG INST 247/766-1 FUGGDeutsche Forschungsgemeinschaft (DFG) DFG - INST 247/870-1 FUGGDeutsche Forschungsgemeinschaft (DFG) LU 2568/1-1Deutsche Forschungsgemeinschaft (DFG) SPP-1935Klaus Tschira Stiftung (KTS) KT14MEXT KAKENHI JP19H05466Ministerium für Wissenschaft und Gesundheit (MWG), Rhineland-Palatinate TB-Nr.:3658/19Peter und Traudl Engelhorn Stiftung (Peter and Traudl Engelhorn Foundation)
6 · The paper itself

Abstract

Piwi-interacting RNAs (piRNAs) direct PIWI proteins to transposons to silence them, thereby preserving genome integrity and fertility. The piRNA population can be expanded in the ping-pong amplification loop. Within this process, piRNA-associated PIWI proteins (piRISC) enter a membraneless organelle called nuage to cleave their target RNA, which is stimulated by Gtsf proteins. The resulting cleavage product gets loaded into an empty PIWI protein to form a new piRISC complex. However, for piRNA amplification to occur, the new RNA substrates, Gtsf-piRISC, and empty PIWI proteins have to be in physical proximity. In this study, we show that in silkworm cells, the Gtsf1 homolog BmGtsf1L binds to piRNA-loaded BmAgo3 and localizes to granules positive for BmAgo3 and BmVreteno. Biochemical assays further revealed that conserved residues within the unstructured tail of BmGtsf1L directly interact with BmVreteno. Using a combination of AlphaFold modeling, atomistic molecular dynamics simulations, and in vitro assays, we identified a novel binding interface on the BmVreteno-eTudor domain, which is required for BmGtsf1L binding. Our study reveals that a single eTudor domain within BmVreteno provides two binding interfaces and thereby interconnects piRNA-loaded BmAgo3 and BmGtsf1L.

Indexed as

BombyxAnimalsArgonaute ProteinsPiwi-Interacting RNARNA, Small InterferingTudor DomainArgonaute ProteinsPiwi-Interacting RNARNA, Small InterferingAgo3eTudorGtsfpiRNAVreteno

Identifiers

PMID37984437
PMCPMC10711660
OpenAlexW4388852077

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.