Evidence map›Paper›PMID 37984375›Full record

ArticleGenes to cells : devoted to molecular & cellular mechanisms2024

Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I.

Hiromichi Okuma, Yumiko Saijo-Hamano, Hiroshi Yamada, Aalaa Alrahman Sherif, Emi Hashizaki, Naoki Sakai, Takaaki Kato, Tsuyoshi Imasaki, Satoshi Kikkawa, Eriko Nitta and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Genes to cells : devoted to molecular & cellular mechanisms, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I.Genes to cells : devoted to molecular & cellular mechanisms · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 1 country.

Hiromichi OkumaDivision of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan.
Yumiko Saijo-HamanoDivision of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan.
Hiroshi YamadaDepartment of Neuroscience, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.
Aalaa Alrahman SherifDepartment of Genome Informatics, Research Institute for Microbial Diseases, Osaka, Japan.
Emi HashizakiLaboratory of Immunoparasitology, Osaka University, Osaka, Japan.
Naoki SakaiRIKEN SPring-8 Center, Sayo-gun, Japan.
Takaaki KatoDivision of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan.
Tsuyoshi ImasakiDivision of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan.
Satoshi KikkawaDivision of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan.
Eriko NittaDivision of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan.
Miwa SasaiLaboratory of Immunoparasitology, Osaka University, Osaka, Japan.
Tadashi AbeDepartment of Neuroscience, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.
Fuminori SugiharaCore Instrumentation Facility, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Yoshimasa ManiwaDivision of Thoracic Surgery, Kobe University Graduate School of Medicine, Kobe, Japan.
Hidetaka KosakoDivision of Cell Signaling, Fujii Memorial Institute of Medical Sciences, Tokushima University, Tokushima, Japan.
Kohji TakeiDepartment of Neuroscience, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan.
Daron M StandleyDepartment of Genome Informatics, Research Institute for Microbial Diseases, Osaka, Japan.
Masahiro YamamotoLaboratory of Immunoparasitology, Osaka University, Osaka, Japan.
Ryo NittaDivision of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan.ORCID https://orcid.org/0000-0002-6537-9272
Kobe University · JPOkayama University · JPOsaka University of Economics · JPMicrobial Chemistry Research Foundation · JPSPring-8 · JPThe University of Osaka · JPTokushima University · JP

Funding

Japan Agency for Medical Research and Development JP20am0101108Japan Agency for Medical Research and Development JP21am0101070Japan Agency for Medical Research and Development JP21gm0810013Japan Agency for Medical Research and Development JP223fa627002Japan Agency for Medical Research and Development JP22wm0325010Japan Agency for Medical Research and Development JP23fk0108682Japan Society for the Promotion of Science 19H00970Japan Society for the Promotion of Science 19H04809Japan Society for the Promotion of Science 20B304Japan Society for the Promotion of Science 21H05254Japan Society for the Promotion of Science 21K06988Japan Society for the Promotion of Science 21K19352Japan Society for the Promotion of Science 22H02795Moonshot Research and Development Program JPMJMS2024
6 · The paper itself

Abstract

Irgb6 is a priming immune-related GTPase (IRG) that counteracts Toxoplasma gondii. It is known to be recruited to the low virulent type II T. gondii parasitophorous vacuole (PV), initiating cell-autonomous immunity. However, the molecular mechanism by which immunity-related GTPases become inactivated after the parasite infection remains obscure. Here, we found that Thr95 of Irgb6 is prominently phosphorylated in response to low virulent type II T. gondii infection. We observed that a phosphomimetic T95D mutation in Irgb6 impaired its localization to the PV and exhibited reduced GTPase activity in vitro. Structural analysis unveiled an atypical conformation of nucleotide-free Irgb6-T95D, resulting from a conformational change in the G-domain that allosterically modified the PV membrane-binding interface. In silico docking corroborated the disruption of the physiological membrane binding site. These findings provide novel insights into a T. gondii-induced allosteric inactivation mechanism of Irgb6.

Indexed as

ToxoplasmaGTP PhosphohydrolasesPhosphorylationVacuolesGTP Phosphohydrolasesallosteric conformational changeimmune-related GTPaseIrgb6phosphorylationToxoplasma gondiix-ray crystallography

Identifiers

PMID37984375
PMCPMC11448365
OpenAlexW4388852107

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.