Evidence map›Paper›PMID 37982611›Full record

ArticleJournal of clinical microbiology2023

Real-time RT-PCR for Venezuelan equine encephalitis complex, Madariaga, and Eastern equine encephalitis viruses: application in human and mosquito public health surveillance in Panama.

Jean-Paul Carrera, Dimelza Araúz, Alejandra Rojas, Fátima Cardozo, Victoria Stittleburg, Ingra Morales Claro, Josefrancisco Galue, Carlos Lezcano-Coba, Filipe Romero Rebello Moreira, Luis Felipe -Rivera and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 9 institutions in 5 countries.

Jean-Paul CarreraDepartment of Biology, University of Oxford , Oxford, United Kingdom.ORCID 0000-0002-1459-2858
Dimelza AraúzDepartment of Research in Virology and Biotechnology, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Alejandra RojasDepartamento de Producción, Instituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción , San Lorenzo, Paraguay.
Fátima CardozoDepartamento de Producción, Instituto de Investigaciones en Ciencias de la Salud, Universidad Nacional de Asunción , San Lorenzo, Paraguay.
Victoria StittleburgDivision of Infectious Diseases, Department of Medicine, Emory University , Atlanta, Georgia, USA.
Ingra Morales ClaroInstituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo , São Paulo, Brazil.
Josefrancisco GalueDepartment of Research in Virology and Biotechnology, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Carlos Lezcano-CobaDepartment of Research in Virology and Biotechnology, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Filipe Romero Rebello MoreiraMRC Centre for Global Infectious Disease Analysis (MRC-GIDA), Department of Infectious Disease Epidemiology, Imperial College London , London, United Kingdom.
Luis Felipe -RiveraDepartment of Research in Virology and Biotechnology, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Maria Chen-GermánDepartment of Research in Virology and Biotechnology, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Brechla MorenoDepartment of Research in Virology and Biotechnology, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Zeuz Capitan-BarriosDepartment of Research in Virology and Biotechnology, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Sandra López-VergèsDepartment of Research in Virology and Biotechnology, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Juan Miguel PascaleClinical of Tropical Diseases and Research Unit, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Ester C SabinoInstituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo , São Paulo, Brazil.
Anayansi ValderramaViral Emerging Disease Dynamics Group, Gorgas Memorial Institute of Health Studies , Panama City, Panama.
Kathryn A HanleyDepartment of Biology, New Mexico State University , Las Cruces, New Mexico, USA.
Christl A DonnellyPandemic Sciences Institute, Nuffield Department of Medicine, University of Oxford , Oxford, United Kingdom.
Nikos VasilakisDepartment of Pathology, The University of Texas Medical Branch , Galveston, Texas, USA.
Nuno R FariaDepartment of Biology, University of Oxford , Oxford, United Kingdom.ORCID 0000-0001-8839-2798
Jesse J WaggonerDivision of Infectious Diseases, Department of Medicine, Emory University , Atlanta, Georgia, USA.
Instituto Conmemorativo Gorgas de Estudios de la Salud · PAUniversidade de São Paulo · BREmory University · USUniversidad Nacional de Asunción · PYNew Mexico State University · USThe University of Texas Medical Branch at Galveston · USUniversidad de Panamá · PAUniversidade Federal do Rio de Janeiro · BRUniversity of Oxford · GB

Funding

Coordinating Research on Emerging Arboviral Threats Encompassing the Neotropics II (CREATE-NEO II)U01AI151807 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Kathryn Alyce Hanley, MAURICIO Lacerda NOGUEIRA · 2020 to 2026
$9.8M
American Asian Centers for Arbovirus Research and Enhanced Surveillance (A2CARES)U01AI151788 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Josefina Coloma, Eva Harris · 2020 to 2026
$9.6M
Once Bitten: Detecting the World???s Most Common Vector-Borne PathogensK08AI110528 · NIAID · STANFORD UNIVERSITY · PI WAGGONER, JESSE · 2014 to 2018
$917k
Medical Research Council MR/S019510/1Medical Research Council MR/X020258/1NIAID NIH HHS K08 AI110528NIAID NIH HHS U01 AI151788NIAID NIH HHS U01 AI151807
6 · The paper itself

Abstract

Eastern equine encephalitis virus (EEEV), Madariaga virus (MADV), and Venezuelan equine encephalitis virus complex (VEEV) are New World alphaviruses transmitted by mosquitoes. They cause febrile and sometimes severe neurological diseases in human and equine hosts. Detecting them during the acute phase is hindered by non-specific symptoms and limited diagnostic tools. We designed and clinically assessed real-time reverse transcription polymerase chain reaction assays (rRT-PCRs) for VEEV complex, MADV, and EEEV using whole-genome sequences. Validation involved 15 retrospective serum samples from 2015 to 2017 outbreaks, 150 mosquito pools from 2015, and 118 prospective samples from 2021 to 2022 surveillance in Panama. The rRT-PCRs detected VEEV complex RNA in 10 samples (66.7%) from outbreaks, with one having both VEEV complex and MADV RNAs. VEEV complex RNA was found in five suspected dengue cases from disease surveillance. The rRT-PCR assays identified VEEV complex RNA in three

Indexed as

AlphavirusCulicidaeDengueEncephalitis Virus, Eastern EquineEncephalomyelitis, Eastern EquineEncephalomyelitis, Venezuelan EquineAnimalsHorsesHumansPhylogenyProspective StudiesPublic Health SurveillanceRetrospective StudiesReverse Transcriptase Polymerase Chain ReactionRNARNAalphavirusEastern equine encephalitis virusMadariaga virusrRT-PCRVenezuelan equine encephalitis

Identifiers

PMID37982611
PMCPMC10729654
OpenAlexW4388825909

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.