Evidence map›Paper›PMID 37980543›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2024

GalNAc-conjugated siRNA targeting the DNAJB1-PRKACA fusion junction in fibrolamellar hepatocellular carcinoma.

Christoph Neumayer, Denise Ng, David Requena, Caroline S Jiang, Adam Qureshi, Roger Vaughan, Thazha P Prakash, Alexey Revenko, Sanford M Simon

Open access · hybridAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Christoph NeumayerLaboratory of Cellular Biophysics, The Rockefeller University, New York, NY, USA.
Denise NgLaboratory of Cellular Biophysics, The Rockefeller University, New York, NY, USA.
David RequenaLaboratory of Cellular Biophysics, The Rockefeller University, New York, NY, USA.
Caroline S JiangHospital Biostatistics, The Rockefeller University, New York, NY, USA.
Adam QureshiHospital Biostatistics, The Rockefeller University, New York, NY, USA.
Roger VaughanHospital Biostatistics, The Rockefeller University, New York, NY, USA.
Thazha P PrakashIonis Pharmaceuticals, Carlsbad, CA, USA.
Alexey RevenkoIonis Pharmaceuticals, Carlsbad, CA, USA.
Sanford M SimonLaboratory of Cellular Biophysics, The Rockefeller University, New York, NY, USA. Electronic address: simon@rockefeller.edu.
Rockefeller University · USRockefeller University Hospital · USIonis Pharmaceuticals (United States) · US

Funding

Developing, Demonstrating, and Disseminating Innovative Programs to Achieve Translational SuccessUL1TR001866 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY, KRUEGER, JAMES G · 2016 to 2025
$40.6M
Project 4: ImmunovirotherapyP50CA210964 · NCI · MAYO CLINIC ROCHESTER · PI Zongming Eric Chen · 2018 to 2026
$20.5M
What differences between the chimeric fusion oncoprotein DNAJB1-PRKACA and native kinase PRKACA lead to transformation in the childhood cancer, fibrolamellar hepatocellular carcinoma?U54CA243126 · NCI · ROCKEFELLER UNIVERSITY · PI SIMON, SANFORD M · 2019 to 2023
$5.4M
ASO and shRNA for targeting the oncogenic transcript driving fibrolamellar hepatocellular carcinomaR01CA248507 · NCI · ROCKEFELLER UNIVERSITY · PI SIMON, SANFORD M · 2020 to 2024
$2.1M
NCATS NIH HHS UL1 TR001866NCI NIH HHS P50 CA210964NCI NIH HHS R01 CA248507NCI NIH HHS U54 CA243126
6 · The paper itself

Abstract

Fibrolamellar hepatocellular carcinoma (FLC) is a rare liver cancer caused by a dominant recurrent fusion of the heat shock protein (DNAJB1) and the catalytic subunit of protein kinase A (PRKACA). Current therapies such as chemotherapy and radiation have limited efficacy, and new treatment options are needed urgently. We have previously shown that FLC tumors are dependent on the fusion kinase DNAJB1::PRKACA, making the oncokinase an ideal drug target. mRNA degrading modalities such as antisense oligonucleotides or small interfering RNAs (siRNAs) provide an opportunity to specifically target the fusion junction. Here, we identify a potent and specific siRNA that inhibits DNAJB1::PRKACA expression. We found expression of the asialoglycoprotein receptor in FLC to be maintained at sufficient levels to effectively deliver siRNA conjugated to the GalNAc ligand. We observe productive uptake and siRNA activity in FLC patient-derived xenografts (PDX) models in vitro and in vivo. Knockdown of DNAJB1::PRKACA results in durable growth inhibition of FLC PDX in vivo with no detectable toxicities. Our results suggest that this approach could be a treatment option for FLC patients.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsCyclic AMP-Dependent Protein Kinase Catalytic SubunitsCyclic AMP-Dependent Protein KinasesHSP40 Heat-Shock ProteinsHumansRNA, Double-StrandedRNA, Small InterferingCyclic AMP-Dependent Protein Kinase Catalytic SubunitsCyclic AMP-Dependent Protein KinasesDNAJB1 protein, humanHSP40 Heat-Shock ProteinsPRKACA protein, humanRNA, Double-StrandedRNA, Small Interferingantisense oligonucleotidesASGRDNAJB1::PRKACAFLCGalNAc conjugationliver cancerProtein Kinase AsiRNA

Identifiers

PMID37980543
PMCPMC10787139
OpenAlexW4388813073

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.