Evidence map›Paper›PMID 37980340›Full record

ArticleNature communications2023

Architecture of the baculovirus nucleocapsid revealed by cryo-EM.

Xudong Jia, Yuanzhu Gao, Yuxuan Huang, Linjun Sun, Siduo Li, Hongmei Li, Xueqing Zhang, Yinyin Li, Jian He, Wenbi Wu and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Viral interference of nucleocytoplasmic transport.The Journal of biological chemistry · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
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  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Xudong Jia *State key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.ORCID 0000-0003-2546-2685
Yuanzhu Gao *State key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.
Yuxuan HuangState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.ORCID 0009-0007-1459-4953
Linjun SunState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.ORCID 0009-0006-7273-6051
Siduo LiState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.ORCID 0000-0003-0626-275X
Hongmei LiState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.
Xueqing ZhangState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.
Yinyin LiState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.
Jian HeState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.
Wenbi WuState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.
Harikanth VenkannagariDepartment of Biochemistry and Molecular Biology, McGovern Medical School at the University of Texas Health Science Center, Houston, TX, 77030, USA.ORCID 0000-0001-9769-2303
Kai YangState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China.
Matthew L BakerDepartment of Biochemistry and Molecular Biology, McGovern Medical School at the University of Texas Health Science Center, Houston, TX, 77030, USA. Matthew.L.Baker@uth.tmc.edu.ORCID 0000-0001-9039-8523
Qinfen ZhangState key laboratory of biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, China. Lsszqf@mail.sysu.edu.cn.ORCID 0000-0001-6599-8105
Sun Yat-sen University · CNThe University of Texas Health Science Center · USThe University of Texas Health Science Center at Houston · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Baculovirus Autographa californica multiple nucleopolyhedrovirus (AcMNPV) has been widely used as a bioinsecticide and a protein expression vector. Despite their importance, very little is known about the structure of most baculovirus proteins. Here, we show a 3.2 Å resolution structure of helical cylindrical body of the AcMNPV nucleocapsid, composed of VP39, as well as 4.3 Å resolution structures of both the head and the base of the nucleocapsid composed of over 100 protein subunits. AcMNPV VP39 demonstrates some features of the HK97-like fold and utilizes disulfide-bonds and a set of interactions at its C-termini to mediate nucleocapsid assembly and stability. At both ends of the nucleocapsid, the VP39 cylinder is constricted by an outer shell ring composed of proteins AC104, AC142 and AC109. AC101(BV/ODV-C42) and AC144(ODV-EC27) form a C14 symmetric inner layer at both capsid head and base. In the base, these proteins interact with a 7-fold symmetric capsid plug, while a portal-like structure is seen in the central portion of head. Additionally, we propose an application of AlphaFold2 for model building in intermediate resolution density.

Indexed as

BaculoviridaeNucleocapsidAnimalsCapsid ProteinsCryoelectron MicroscopyNucleopolyhedrovirusesSpodopteraCapsid Proteins

Identifiers

PMID37980340
PMCPMC10657434
OpenAlexW4388797899

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.