Evidence map›Paper›PMID 37978420›Full record

ArticleBMC microbiology2023

Culture-dependent screening of endospore-forming clostridia in infant feces.

Eugenio Ingribelli, Nikol Modrackova, Vaclav Tejnecky, Jiri Killer, Clarissa Schwab, Vera Neuzil-Bunesova

Abstract read
In one paragraph

Article in BMC microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Eugenio IngribelliDepartment of Microbiology, Nutrition and Dietetics, Czech University of Life Sciences Prague, Prague, Czechia.
Nikol ModrackovaDepartment of Microbiology, Nutrition and Dietetics, Czech University of Life Sciences Prague, Prague, Czechia.
Vaclav TejneckyDepartment of Soil Science and Soil Protection, Czech University of Life Sciences Prague, Prague, Czechia.
Jiri KillerDepartment of Microbiology, Nutrition and Dietetics, Czech University of Life Sciences Prague, Prague, Czechia.
Clarissa SchwabBiological and Chemical Engineering, Aarhus University, Aarhus C, Denmark.
Vera Neuzil-BunesovaDepartment of Microbiology, Nutrition and Dietetics, Czech University of Life Sciences Prague, Prague, Czechia. bunesova@af.czu.cz.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOnly a few studies dealt with the occurrence of endospore-forming clostridia in the microbiota of infants without obvious health complications.

methodsA methodology pipeline was developed to determine the occurrence of endospore formers in infant feces. Twenty-four fecal samples (FS) were collected from one infant in monthly intervals and were subjected to variable chemical and heat treatment in combination with culture-dependent analysis. Isolates were identified by MALDI-TOF mass spectrometry, 16S rRNA gene sequencing, and characterized with biochemical assays.

resultsMore than 800 isolates were obtained, and a total of 21 Eubacteriales taxa belonging to the Clostridiaceae, Lachnospiraceae, Oscillospiraceae, and Peptostreptococcaceae families were detected. Clostridium perfringens, C. paraputrificum, C. tertium, C. symbiosum, C. butyricum, and C. ramosum were the most frequently identified species compared to the rarely detected Enterocloster bolteae, C. baratii, and C. jeddahense. Furthermore, the methodology enabled the subsequent cultivation of less frequently detectable gut taxa such as Flavonifractor plautii, Intestinibacter bartlettii, Eisenbergiella tayi, and Eubacterium tenue. The isolates showed phenotypic variability regarding enzymatic activity, fermentation profiles, and butyrate production.

conclusionsTaken together, this approach suggests and challenges a cultivation-based pipeline that allows the investigation of the population of endospore formers in complex ecosystems such as the human gastrointestinal tract.

Indexed as

ClostridiumMicrobiotaBacillotaFecesHumansInfantRNA, Ribosomal, 16SRNA, Ribosomal, 16SButyrateClostridiumCultivationEndospore formersFermentation profilesInfant gut microbiota

Identifiers

PMID37978420
PMCPMC10655253

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.