Evidence map›Paper›PMID 37976416›Full record

ArticleACS nano2023

Bottom-up Assembled Synthetic SARS-CoV-2 Miniviruses Reveal Lipid Membrane Affinity of Omicron Variant Spike Glycoprotein.

Ana Yagüe Relimpio, Andreas Fink, Duc Thien Bui, Sebastian Fabritz, Martin Schröter, Alessia Ruggieri, Ilia Platzman, Joachim P Spatz

Open access · hybridAbstract read
In one paragraph

Article in ACS nano, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Bottom-up synthetic immunology.Nature nanotechnology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Ana Yagüe RelimpioDepartment for Cellular Biophysics, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.
Andreas FinkDepartment for Cellular Biophysics, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.
Duc Thien BuiDepartment for Cellular Biophysics, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.
Sebastian FabritzDepartment for Chemical Biology, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.
Martin SchröterDepartment for Cellular Biophysics, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.
Alessia RuggieriHeidelberg University, Medical Faculty, Centre for Integrative Infectious Disease Research (CIID), Department of Infectious Diseases, Molecular Virology, Im Neuenheimer Feld 344, 69120 Heidelberg, Germany.
Ilia PlatzmanDepartment for Cellular Biophysics, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.
Joachim P SpatzDepartment for Cellular Biophysics, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.ORCID 0000-0003-3419-9807
Heidelberg University · DEMax Planck Institute for Medical Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ongoing COVID-19 pandemic has been brought on by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The spike glycoprotein (S), which decorates the viral envelope forming a corona, is responsible for the binding to the angiotensin-converting enzyme 2 (ACE2) receptor and initiating the infection. In comparison to previous variants, Omicron S presents additional binding sites as well as a more positive surface charge. These changes hint at additional molecular targets for interactions between virus and cell, such as the cell membrane or proteoglycans on the cell surface. Herein, bottom-up assembled synthetic SARS-CoV-2 miniviruses (MiniVs), with a lipid composition similar to that of infectious particles, are implemented to study and compare the binding properties of Omicron and Alpha variants. Toward this end, a systematic functional screening is performed to study the binding ability of Omicron and Alpha S proteins to ACE2-functionalized and nonfunctionalized planar supported lipid bilayers. Moreover, giant unilamellar vesicles are used as a cell membrane model to perform competitive interaction assays of the two variants. Finally, two cell lines with and without presentation of the ACE2 receptor are used to confirm the binding properties of the Omicron and Alpha MiniVs to the cellular membrane. Altogether, the results reveal a significantly higher affinity of Omicron S toward both the lipid membrane and ACE2 receptor. The research presented here highlights the advantages of creating and using bottom-up assembled SARS-CoV-2 viruses to understand the impact of changes in the affinity of S for ACE2 in infection studies.

Indexed as

COVID-19SARS-CoV-2Angiotensin-Converting Enzyme 2HumansLipid BilayersPandemicsProtein BindingProteoglycansSpike Glycoprotein, CoronavirusAngiotensin-Converting Enzyme 2Lipid BilayersProteoglycansSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2bottom-up synthetic biologygiant unilamellar vesiclesOmicronSARS-CoV-2small unilamellar vesiclesspike proteinsynthetic minivirus

Identifiers

PMID37976416
PMCPMC10722588
OpenAlexW4388753576

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.