Evidence map›Paper›PMID 37976354›Full record

ArticleScience advances2023

DOT1L is a barrier to histone acetylation during reprogramming to pluripotency.

Coral K Wille, Xiaoya Zhang, Spencer A Haws, John M Denu, Rupa Sridharan

Abstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. IGF2BP3 recognizes mThe EMBO journal · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. The Wild West of spike-in normalization.Nature biotechnology · 2024
    Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Coral K WilleWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.ORCID 0000-0002-0506-3209
Xiaoya ZhangWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.ORCID 0000-0002-1614-0011
Spencer A HawsWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.ORCID 0000-0002-2166-1858
John M DenuWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.
Rupa SridharanWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.ORCID 0000-0001-8870-1722

Funding

R01 Renewal: Collaboration of chromatin remodeling and signaling pathways in pluripotencyR01GM113033 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SRIDHARAN, RUPA · 2015 to 2023
$2.9M
Dynamics and molecular mechanisms linking metabolism and the epigenomeR35GM149279 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI JOHN M DENU · 2023 to 2026
$2.8M
NIGMS NIH HHS R01 GM113033NIGMS NIH HHS R35 GM149279
6 · The paper itself

Abstract

Embryonic stem cells (ESCs) have transcriptionally permissive chromatin enriched for gene activation-associated histone modifications. A striking exception is DOT1L-mediated H3K79 dimethylation (H3K79me2) that is considered a positive regulator of transcription. We find that ESCs are depleted for H3K79me2 at shared locations of enrichment with somatic cells, which are highly and ubiquitously expressed housekeeping genes, and have lower RNA polymerase II (RNAPII) at the transcription start site (TSS) despite greater nascent transcription. Inhibiting DOT1L increases the efficiency of reprogramming of somatic to induced pluripotent stem cells, enables an ESC-like RNAPII pattern at the TSS, and functionally compensates for enforced RNAPII pausing. DOT1L inhibition increases H3K27 methylation and RNAPII elongation-enhancing histone acetylation without changing the expression of the causal histone-modifying enzymes. Only the maintenance of elevated histone acetylation is essential for enhanced reprogramming and occurs at loci that are depleted for H3K79me2. Thus, DOT1L inhibition promotes the hyperacetylation and hypertranscription pluripotent properties.

Indexed as

ChromatinHistonesAcetylationCell DifferentiationRNA Polymerase IITranscription, GeneticChromatinHistonesRNA Polymerase II

Identifiers

PMID37976354
PMCPMC10656071

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.